Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain

Thomas F. Miller, Eric Vanden Eijnden, David Chandler

Research output: Contribution to journalArticle

Abstract

With computer simulations of >100,000 atoms, the mechanism for the hydrophobic collapse of an idealized hydrated chain was obtained by tiling space with (0.2 nm)3 cubes and projecting the atomistic water molecule positions onto this grid. With the coarse-grained field thus defined, the string method in collective variables was used to compute a minimum free-energy pathway (MFEP) for the collapsing chain. These calculations provide a proof of principle for a coarse-grained description of water solvent. Furthermore, the calculated MFEP characterizes the mechanism for the collapse of the hydrated chain by providing a path of maximum likelihood for dynamical trajectories. The reliability of the calculated MFEP was confirmed with the use of conventional molecular dynamics trajectories. Analysis of the MFEP provides atomistic confirmation for the mechanism of hydrophobic collapse proposed by ten Wolde and Chandler. In particular, we show that length-scale-dependent hydrophobic dewetting is the rate-limiting step in the hydrophobic collapse of the considered chain.

Original languageEnglish (US)
Pages (from-to)14559-14564
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume104
Issue number37
DOIs
StatePublished - Sep 11 2007

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Water
Molecular Dynamics Simulation
Computer Simulation

Keywords

  • Rare-event dynamics
  • Water

ASJC Scopus subject areas

  • Genetics
  • General

Cite this

Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain. / Miller, Thomas F.; Vanden Eijnden, Eric; Chandler, David.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 37, 11.09.2007, p. 14559-14564.

Research output: Contribution to journalArticle

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