Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax

Xiaorong Feng, Jane M. Carlton, Deirdre A. Joy, Jianbing Mu, Tetsuya Furuya, Bernard B. Suh, Yufeng Wang, John W. Barnwell, Xin Zhuan Su

Research output: Contribution to journalArticle

Abstract

The study of genetic variation in malaria parasites has practical significance for developing strategies to control the disease. Vaccines based on highly polymorphic antigens may be confounded by allelic restriction of the host immune response. In response to drug pressure, a highly plastic genome may generate resistant mutants more easily than a monomorphic one. Additionally, the study of the distribution of genomic polymorphisms may provide information leading to the identification of genes associated with traits such as parasite development and drug resistance. Indeed, the age and diversity of the human malaria parasite Plasmodium falciparum has been the subject of recent debate, because an ancient parasite with a complex genome is expected to present greater challenges for drug and vaccine development. The genome diversity of the important human pathogen Plasmodium vivax, however, remains essentially unknown. Here we analyze an ≈100-kb contiguous chromosome segment from five isolates, revealing 191 single-nucleotide polymorphisms (SNPs) and 44 size polymorphisms. The SNPs are not evenly distributed across the segment with blocks of high and low diversity. Whereas the majority (≈63%) of the SNPs are in intergenic regions, introns contain significantly less SNPs than intergenic sequences. Polymorphic tandem repeats are abundant and are more uniformly distributed at a frequency of about one polymorphic tandem repeat per 3 kb. These data show that P. vivax has a highly diverse genome, and provide useful information for further understanding the genome diversity of the parasite.

Original languageEnglish (US)
Pages (from-to)8502-8507
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume100
Issue number14
DOIs
StatePublished - Jul 8 2003

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Plasmodium vivax
Single Nucleotide Polymorphism
Parasites
Genome
Intergenic DNA
Tandem Repeat Sequences
Vaccines
Falciparum Malaria
Drug Resistance
Pharmaceutical Preparations
Introns
Plastics
Malaria
Chromosomes
Antigens
Pressure
Genes

ASJC Scopus subject areas

  • Genetics
  • General

Cite this

Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. / Feng, Xiaorong; Carlton, Jane M.; Joy, Deirdre A.; Mu, Jianbing; Furuya, Tetsuya; Suh, Bernard B.; Wang, Yufeng; Barnwell, John W.; Su, Xin Zhuan.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14, 08.07.2003, p. 8502-8507.

Research output: Contribution to journalArticle

Feng, Xiaorong ; Carlton, Jane M. ; Joy, Deirdre A. ; Mu, Jianbing ; Furuya, Tetsuya ; Suh, Bernard B. ; Wang, Yufeng ; Barnwell, John W. ; Su, Xin Zhuan. / Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. In: Proceedings of the National Academy of Sciences of the United States of America. 2003 ; Vol. 100, No. 14. pp. 8502-8507.
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