Sian: A tool for assessing structural identifiability of parametric ODEs

Hoon Hong, Alexey Ovchinnikov, Gleb Pogudin, Chee Yap

Research output: Contribution to journalArticle

Abstract

Many important real-world processes are modeled using systems of ordinary differential equations (ODEs) involving unknown parameters. The values of these parameters are usually inferred from experimental data. However, due to the structure of the model, there might be multiple parameter values that yield the same observed behavior even in the case of continuous noise-free data. It is important to detect such situations a priori, before collecting actual data. In this case, the only input is the model itself, so it is natural to tackle this question by methods of symbolic computation. We present new software SIAN (Structural Identifiability ANalyser) that solves this problem. Our software allows to tackle problems that could not be tackled before. It is written in Maple and available at https://github.com/pogudingleb/SIAN.

Original languageEnglish (US)
Pages (from-to)37-40
Number of pages4
JournalACM Communications in Computer Algebra
Volume53
Issue number2
DOIs
StatePublished - Jun 2019

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Identifiability
Ordinary differential equations
Ordinary differential equation
Software
Maple
Symbolic Computation
System of Ordinary Differential Equations
Unknown Parameters
Experimental Data
Model

ASJC Scopus subject areas

  • Computational Theory and Mathematics
  • Computational Mathematics

Cite this

Sian : A tool for assessing structural identifiability of parametric ODEs. / Hong, Hoon; Ovchinnikov, Alexey; Pogudin, Gleb; Yap, Chee.

In: ACM Communications in Computer Algebra, Vol. 53, No. 2, 06.2019, p. 37-40.

Research output: Contribution to journalArticle

Hong, Hoon ; Ovchinnikov, Alexey ; Pogudin, Gleb ; Yap, Chee. / Sian : A tool for assessing structural identifiability of parametric ODEs. In: ACM Communications in Computer Algebra. 2019 ; Vol. 53, No. 2. pp. 37-40.
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