Selection at behavioural, developmental and metabolic genes is associated with the northward expansion of a successful tropical colonizer

Yann Bourgeois, Stéphane Boissinot

Research output: Contribution to journalArticle

Abstract

What makes a species able to colonize novel environments? This question is key to understand the dynamics of adaptive radiations and ecological niche shifts, but the mechanisms that underlie expansion into novel habitats remain poorly understood at a genomic scale. Lizards from the genus Anolis are typically tropical, and the green anole (Anolis carolinensis) constitutes an exception since it expanded into temperate North America from subtropical Florida. Thus, we used the green anole as a model to investigate signatures of selection associated with colonization of a new environment, namely temperate North America. To this end, we analysed 29 whole-genome sequences, covering the entire native range of the species. We used a combination of recent methods to quantify both positive and balancing selection in northern populations, including FST outlier methods, machine learning and ancestral recombination graphs. We naively scanned for genes of interest and assessed the overlap between multiple tests. Strikingly, we identified many genes involved in behaviour, suggesting that the recent successful colonization of northern environments may have been linked to behavioural shifts as well as physiological adaptation. Using a candidate genes strategy, we determined that genes involved in response to cold or behaviour displayed more frequently signals of selection, while controlling for local recombination rate, gene clustering and gene length. In addition, we found signatures of balancing selection at immune genes in all investigated genetic groups, but also at genes involved in neuronal and anatomical development.

Original languageEnglish (US)
Pages (from-to)3523-3543
Number of pages21
JournalMolecular ecology
Volume28
Issue number15
DOIs
StatePublished - Aug 1 2019

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Keywords

  • Anolis carolinensis
  • adaptation
  • anole
  • behaviour
  • colonization
  • genomics
  • machine learning

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics

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