Abstract
Resolving the genetic complexity of heritable phenotypic variation is fundamental to understanding the mechanisms of evolution and the etiology of human disease. Trait variation amongisolates from genetically efficient model organisms offers the opportunity to dissect genetic architectures and identify the molecular mechanisms of causation. Here we present a genetic analysis of loss of sensitivity to gene knockdown via exogenous RNA interference in the germlineof a wild isolate of the roundworm Caenorhabditis elegans. We find that the loss of RNA interference sensitivity in the wild isolate CB4856 is recessive to the sensitivity of the lab strain N2. A cross of the strains produced F2 with intermediate sensitivities, and the segregation of the trait among F2s strongly deviated from a single locus recessive allele expectation. Linkage analysis in recombinant inbred lines derived from CB4856 and N2 identified a single significant locus on chromosome I that includes the argonaute gene ppw-1. The alleles for ppw-1 were unable to explain the sensitivity of 18 (12.1%) of the recombinant inbred lines. Complementation tests and F2 segregation analysis of these recombinant inbred lines revealed cases of complex epistatic suppression and enhancement of the effects of ppw-1. We conclude that the variation in RNA interference sensitivity between CB4856 and N2 likely involves the nonadditive interactions of eight or more genes in addition to ppw-1.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 941-947 |
| Number of pages | 7 |
| Journal | G3: Genes, Genomes, Genetics |
| Volume | 3 |
| Issue number | 6 |
| DOIs | |
| State | Published - 2013 |
Fingerprint
Keywords
- Epistasis
- QTL
- RNAi
ASJC Scopus subject areas
- Genetics
- Molecular Biology
- Genetics(clinical)
Cite this
Resistance to germline RNA interference in a caenorhabditis elegans wild isolate exhibits complexity and nonadditivity. / Pollard, Daniel A.; Rockman, Matthew V.
In: G3: Genes, Genomes, Genetics, Vol. 3, No. 6, 2013, p. 941-947.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Resistance to germline RNA interference in a caenorhabditis elegans wild isolate exhibits complexity and nonadditivity
AU - Pollard, Daniel A.
AU - Rockman, Matthew V.
PY - 2013
Y1 - 2013
N2 - Resolving the genetic complexity of heritable phenotypic variation is fundamental to understanding the mechanisms of evolution and the etiology of human disease. Trait variation amongisolates from genetically efficient model organisms offers the opportunity to dissect genetic architectures and identify the molecular mechanisms of causation. Here we present a genetic analysis of loss of sensitivity to gene knockdown via exogenous RNA interference in the germlineof a wild isolate of the roundworm Caenorhabditis elegans. We find that the loss of RNA interference sensitivity in the wild isolate CB4856 is recessive to the sensitivity of the lab strain N2. A cross of the strains produced F2 with intermediate sensitivities, and the segregation of the trait among F2s strongly deviated from a single locus recessive allele expectation. Linkage analysis in recombinant inbred lines derived from CB4856 and N2 identified a single significant locus on chromosome I that includes the argonaute gene ppw-1. The alleles for ppw-1 were unable to explain the sensitivity of 18 (12.1%) of the recombinant inbred lines. Complementation tests and F2 segregation analysis of these recombinant inbred lines revealed cases of complex epistatic suppression and enhancement of the effects of ppw-1. We conclude that the variation in RNA interference sensitivity between CB4856 and N2 likely involves the nonadditive interactions of eight or more genes in addition to ppw-1.
AB - Resolving the genetic complexity of heritable phenotypic variation is fundamental to understanding the mechanisms of evolution and the etiology of human disease. Trait variation amongisolates from genetically efficient model organisms offers the opportunity to dissect genetic architectures and identify the molecular mechanisms of causation. Here we present a genetic analysis of loss of sensitivity to gene knockdown via exogenous RNA interference in the germlineof a wild isolate of the roundworm Caenorhabditis elegans. We find that the loss of RNA interference sensitivity in the wild isolate CB4856 is recessive to the sensitivity of the lab strain N2. A cross of the strains produced F2 with intermediate sensitivities, and the segregation of the trait among F2s strongly deviated from a single locus recessive allele expectation. Linkage analysis in recombinant inbred lines derived from CB4856 and N2 identified a single significant locus on chromosome I that includes the argonaute gene ppw-1. The alleles for ppw-1 were unable to explain the sensitivity of 18 (12.1%) of the recombinant inbred lines. Complementation tests and F2 segregation analysis of these recombinant inbred lines revealed cases of complex epistatic suppression and enhancement of the effects of ppw-1. We conclude that the variation in RNA interference sensitivity between CB4856 and N2 likely involves the nonadditive interactions of eight or more genes in addition to ppw-1.
KW - Epistasis
KW - QTL
KW - RNAi
UR - http://www.scopus.com/inward/record.url?scp=84883215656&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84883215656&partnerID=8YFLogxK
U2 - 10.1534/g3.113.005785
DO - 10.1534/g3.113.005785
M3 - Article
C2 - 23589516
AN - SCOPUS:84883215656
VL - 3
SP - 941
EP - 947
JO - G3 (Bethesda, Md.)
JF - G3 (Bethesda, Md.)
SN - 2160-1836
IS - 6
ER -