Quantum mechanical calculation of electric fields and vibrational Stark shifts at active site of human aldose reductase

Xianwei Wang, John Zhang, Xiao He

Research output: Contribution to journalArticle

Abstract

Recent advance in biophysics has made it possible to directly measure site-specific electric field at internal sites of proteins using molecular probes with C = O or C≡N groups in the context of vibrational Stark effect. These measurements directly probe changes of electric field at specific protein sites due to, e.g., mutation and are very useful in protein design. Computational simulation of the Stark effect based on force fields such as AMBER and OPLS, while providing good insight, shows large errors in comparison to experimental measurement due to inherent difficulties associated with point charge based representation of force fields. In this study, quantum mechanical calculation of protein's internal electrostatic properties and vibrational Stark shifts was carried out by using electrostatically embedded generalized molecular fractionation with conjugate caps method. Quantum calculated change of mutation-induced electric field and vibrational Stark shift is reported at the internal probing site of enzyme human aldose reductase. The quantum result is in much better agreement with experimental data than those predicted by force fields, underscoring the deficiency of traditional point charge models describing intra-protein electrostatic properties.

Original languageEnglish (US)
Article number184111
JournalJournal of Chemical Physics
Volume143
Issue number18
DOIs
StatePublished - Nov 14 2015

Fingerprint

Aldehyde Reductase
Catalytic Domain
Electric fields
proteins
electric fields
shift
field theory (physics)
Stark effect
mutations
Proteins
Static Electricity
Electrostatics
Biophysics
electrostatics
biophysics
Molecular Probes
Mutation
probes
Fractionation
caps

ASJC Scopus subject areas

  • Physics and Astronomy(all)
  • Physical and Theoretical Chemistry
  • Medicine(all)

Cite this

Quantum mechanical calculation of electric fields and vibrational Stark shifts at active site of human aldose reductase. / Wang, Xianwei; Zhang, John; He, Xiao.

In: Journal of Chemical Physics, Vol. 143, No. 18, 184111, 14.11.2015.

Research output: Contribution to journalArticle

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