NetMatch: A Cytoscape plugin for searching biological networks

A. Ferro, R. Giugno, G. Pigola, A. Pulvirenti, D. Skripin, G. D. Bader, Dennis Shasha

Research output: Contribution to journalArticle

Abstract

Summary: NetMatch is a Cytoscape plugin which allows searching biological networks for subcomponents matching a given query. Queries may be approximate in the sense that certain parts of the subgraph-query may be left unspecified. To make the query creation process easy, a drawing tool is provided. Cytoscape is a bioinformatics software platform for the visualization and analysis of biological networks.

Original languageEnglish (US)
Pages (from-to)910-912
Number of pages3
JournalBioinformatics
Volume23
Issue number7
DOIs
StatePublished - Apr 2007

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Drawing (graphics)
Biological Networks
Plug-in
Bioinformatics
Computational Biology
Software
Visualization
Query
Subgraph

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Medicine(all)

Cite this

Ferro, A., Giugno, R., Pigola, G., Pulvirenti, A., Skripin, D., Bader, G. D., & Shasha, D. (2007). NetMatch: A Cytoscape plugin for searching biological networks. Bioinformatics, 23(7), 910-912. https://doi.org/10.1093/bioinformatics/btm032

NetMatch : A Cytoscape plugin for searching biological networks. / Ferro, A.; Giugno, R.; Pigola, G.; Pulvirenti, A.; Skripin, D.; Bader, G. D.; Shasha, Dennis.

In: Bioinformatics, Vol. 23, No. 7, 04.2007, p. 910-912.

Research output: Contribution to journalArticle

Ferro, A, Giugno, R, Pigola, G, Pulvirenti, A, Skripin, D, Bader, GD & Shasha, D 2007, 'NetMatch: A Cytoscape plugin for searching biological networks', Bioinformatics, vol. 23, no. 7, pp. 910-912. https://doi.org/10.1093/bioinformatics/btm032
Ferro A, Giugno R, Pigola G, Pulvirenti A, Skripin D, Bader GD et al. NetMatch: A Cytoscape plugin for searching biological networks. Bioinformatics. 2007 Apr;23(7):910-912. https://doi.org/10.1093/bioinformatics/btm032
Ferro, A. ; Giugno, R. ; Pigola, G. ; Pulvirenti, A. ; Skripin, D. ; Bader, G. D. ; Shasha, Dennis. / NetMatch : A Cytoscape plugin for searching biological networks. In: Bioinformatics. 2007 ; Vol. 23, No. 7. pp. 910-912.
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