Modeling 4D changes in pathological anatomy using domain adaptation

Analysis of TBI imaging using a tumor database

Bo Wang, Marcel Prastawa, Avishek Saha, Suyash P. Awate, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. Van Horn, Valerio Pascucci, Guido Gerig

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Abstract

    Analysis of 4D medical images presenting pathology (i.e., lesions) is significantly challenging due to the presence of complex changes over time. Image analysis methods for 4D images with lesions need to account for changes in brain structures due to deformation, as well as the formation and deletion of new structures (e.g., edema, bleeding) due to the physiological processes associated with damage, intervention, and recovery. We propose a novel framework that models 4D changes in pathological anatomy across time, and provides explicit mapping from a healthy template to subjects with pathology. Moreover, our framework uses transfer learning to leverage rich information from a known source domain, where we have a collection of completely segmented images, to yield effective appearance models for the input target domain. The automatic 4D segmentation method uses a novel domain adaptation technique for generative kernel density models to transfer information between different domains, resulting in a fully automatic method that requires no user interaction. We demonstrate the effectiveness of our novel approach with the analysis of 4D images of traumatic brain injury (TBI), using a synthetic tumor database as the source domain.

    Original languageEnglish (US)
    Title of host publicationMultimodal Brain Image Analysis - Third International Workshop, MBIA 2013, Held in Conjunction with MICCAI 2013, Proceedings
    Pages31-39
    Number of pages9
    Volume8159 LNCS
    DOIs
    StatePublished - 2013
    Event3rd International Workshop on Multimodal Brain Image Analysis, MBIA 2013, Held in Conjunction with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2013 - Nagoya, Japan
    Duration: Sep 22 2013Sep 22 2013

    Publication series

    NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    Volume8159 LNCS
    ISSN (Print)03029743
    ISSN (Electronic)16113349

    Other

    Other3rd International Workshop on Multimodal Brain Image Analysis, MBIA 2013, Held in Conjunction with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2013
    CountryJapan
    CityNagoya
    Period9/22/139/22/13

    Fingerprint

    Anatomy
    Tumors
    Tumor
    Brain
    Imaging
    Pathology
    Imaging techniques
    Modeling
    Image analysis
    Kernel Density
    Transfer Learning
    Information Transfer
    Recovery
    User Interaction
    Medical Image
    Image Analysis
    Leverage
    Deletion
    Template
    Segmentation

    ASJC Scopus subject areas

    • Computer Science(all)
    • Theoretical Computer Science

    Cite this

    Wang, B., Prastawa, M., Saha, A., Awate, S. P., Irimia, A., Chambers, M. C., ... Gerig, G. (2013). Modeling 4D changes in pathological anatomy using domain adaptation: Analysis of TBI imaging using a tumor database. In Multimodal Brain Image Analysis - Third International Workshop, MBIA 2013, Held in Conjunction with MICCAI 2013, Proceedings (Vol. 8159 LNCS, pp. 31-39). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8159 LNCS). https://doi.org/10.1007/978-3-319-02126-3_4

    Modeling 4D changes in pathological anatomy using domain adaptation : Analysis of TBI imaging using a tumor database. / Wang, Bo; Prastawa, Marcel; Saha, Avishek; Awate, Suyash P.; Irimia, Andrei; Chambers, Micah C.; Vespa, Paul M.; Van Horn, John D.; Pascucci, Valerio; Gerig, Guido.

    Multimodal Brain Image Analysis - Third International Workshop, MBIA 2013, Held in Conjunction with MICCAI 2013, Proceedings. Vol. 8159 LNCS 2013. p. 31-39 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8159 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Wang, B, Prastawa, M, Saha, A, Awate, SP, Irimia, A, Chambers, MC, Vespa, PM, Van Horn, JD, Pascucci, V & Gerig, G 2013, Modeling 4D changes in pathological anatomy using domain adaptation: Analysis of TBI imaging using a tumor database. in Multimodal Brain Image Analysis - Third International Workshop, MBIA 2013, Held in Conjunction with MICCAI 2013, Proceedings. vol. 8159 LNCS, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8159 LNCS, pp. 31-39, 3rd International Workshop on Multimodal Brain Image Analysis, MBIA 2013, Held in Conjunction with the 16th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2013, Nagoya, Japan, 9/22/13. https://doi.org/10.1007/978-3-319-02126-3_4
    Wang B, Prastawa M, Saha A, Awate SP, Irimia A, Chambers MC et al. Modeling 4D changes in pathological anatomy using domain adaptation: Analysis of TBI imaging using a tumor database. In Multimodal Brain Image Analysis - Third International Workshop, MBIA 2013, Held in Conjunction with MICCAI 2013, Proceedings. Vol. 8159 LNCS. 2013. p. 31-39. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). https://doi.org/10.1007/978-3-319-02126-3_4
    Wang, Bo ; Prastawa, Marcel ; Saha, Avishek ; Awate, Suyash P. ; Irimia, Andrei ; Chambers, Micah C. ; Vespa, Paul M. ; Van Horn, John D. ; Pascucci, Valerio ; Gerig, Guido. / Modeling 4D changes in pathological anatomy using domain adaptation : Analysis of TBI imaging using a tumor database. Multimodal Brain Image Analysis - Third International Workshop, MBIA 2013, Held in Conjunction with MICCAI 2013, Proceedings. Vol. 8159 LNCS 2013. pp. 31-39 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
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