Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles

Simon L. Freedman, Cristian Suarez, Jonathan D. Winkelman, David R. Kovar, Gregory A. Voth, Aaron R. Dinner, Glen Hocky

Research output: Contribution to journalArticle

Abstract

In cells, actin-binding proteins (ABPs) sort to different regions to establish F-actin networks with diverse functions, including filopodia used for cell migration and contractile rings required for cell division. Recent experimental work uncovered a competition-based mechanism that may facilitate spatial localization of ABPs: binding of a short cross-linker protein to 2 actin filaments promotes the binding of other short cross-linkers and inhibits the binding of longer cross-linkers (and vice versa). We hypothesize this sorting arises because F-actin is semiflexible and cannot bend over short distances. We develop a mathematical theory and lattice models encompassing the most important physical parameters for this process and use coarse-grained simulations with explicit cross-linkers to characterize and test our predictions. Our theory and data predict an explicit dependence of cross-linker separation on bundle polymerization rate. We perform experiments that confirm this dependence, but with an unexpected cross-over in dominance of one cross-linker at high growth rates to the other at slow growth rates, and we investigate the origin of this cross-over with further simulations. The nonequilibrium mechanism that we describe can allow cells to organize molecular material to drive biological processes, and our results can guide the choice and design of cross-linkers for engineered protein-based materials.

Original languageEnglish (US)
Pages (from-to)16192-16197
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume116
Issue number33
DOIs
StatePublished - Aug 13 2019

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Microfilament Proteins
Actins
Physical Phenomena
Biological Phenomena
Pseudopodia
Growth
Actin Cytoskeleton
Protein Binding
Polymerization
Cell Division
Cell Movement
Proteins

Keywords

  • Cytoskeleton
  • Fascin
  • Modeling
  • Sorting
  • α-actinin

ASJC Scopus subject areas

  • General

Cite this

Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles. / Freedman, Simon L.; Suarez, Cristian; Winkelman, Jonathan D.; Kovar, David R.; Voth, Gregory A.; Dinner, Aaron R.; Hocky, Glen.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 116, No. 33, 13.08.2019, p. 16192-16197.

Research output: Contribution to journalArticle

Freedman, Simon L. ; Suarez, Cristian ; Winkelman, Jonathan D. ; Kovar, David R. ; Voth, Gregory A. ; Dinner, Aaron R. ; Hocky, Glen. / Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles. In: Proceedings of the National Academy of Sciences of the United States of America. 2019 ; Vol. 116, No. 33. pp. 16192-16197.
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