Kinetics of DNA-coated sticky particles

Kun Ta Wu, Lang Feng, Ruojie Sha, Rémi Dreyfus, Alexander Y. Grosberg, Nadrian Seeman, Paul M. Chaikin

Research output: Contribution to journalArticle

Abstract

DNA-functionalized particles are promising for complex self-assembly due to their specific controllable thermoreversible interactions. However, there has been little work on the kinetics and the aggregation rate, which depend on the rate of particle encounters and the probability that an encounter results in particles sticking. In this study, we investigate theoretically and experimentally the aggregation times of micron-scale particles as a function of DNA coverage and salt concentration. Our 2-μm colloids accommodate up to 70 000 DNA strands. For full coverage and high salt concentration, the aggregation time is 5 min while for 0.1 coverage and low salt it is 4 days. A simple model using reaction-limited kinetics and experimental oligomer hybridization rates describes the data well. A controlling factor is the Coulomb barrier at the nanometer scale retarding DNA hybridization. Our model allows easy measurements of microscopic hybridization rates from macroscopic aggregation and enables the design of complex self-assembly schemes with controlled kinetics.

Original languageEnglish (US)
Article number022304
JournalPhysical Review E
Volume88
Issue number2
DOIs
StatePublished - Aug 12 2013

Fingerprint

Aggregation
deoxyribonucleic acid
Kinetics
Salt
Coverage
Salts
DNA
Self-assembly
kinetics
salts
encounters
self assembly
Colloids
oligomers
strands
colloids
retarding
Interaction
Model
interactions

ASJC Scopus subject areas

  • Condensed Matter Physics
  • Statistical and Nonlinear Physics
  • Statistics and Probability
  • Medicine(all)

Cite this

Wu, K. T., Feng, L., Sha, R., Dreyfus, R., Grosberg, A. Y., Seeman, N., & Chaikin, P. M. (2013). Kinetics of DNA-coated sticky particles. Physical Review E, 88(2), [022304]. https://doi.org/10.1103/PhysRevE.88.022304

Kinetics of DNA-coated sticky particles. / Wu, Kun Ta; Feng, Lang; Sha, Ruojie; Dreyfus, Rémi; Grosberg, Alexander Y.; Seeman, Nadrian; Chaikin, Paul M.

In: Physical Review E, Vol. 88, No. 2, 022304, 12.08.2013.

Research output: Contribution to journalArticle

Wu, KT, Feng, L, Sha, R, Dreyfus, R, Grosberg, AY, Seeman, N & Chaikin, PM 2013, 'Kinetics of DNA-coated sticky particles', Physical Review E, vol. 88, no. 2, 022304. https://doi.org/10.1103/PhysRevE.88.022304
Wu KT, Feng L, Sha R, Dreyfus R, Grosberg AY, Seeman N et al. Kinetics of DNA-coated sticky particles. Physical Review E. 2013 Aug 12;88(2). 022304. https://doi.org/10.1103/PhysRevE.88.022304
Wu, Kun Ta ; Feng, Lang ; Sha, Ruojie ; Dreyfus, Rémi ; Grosberg, Alexander Y. ; Seeman, Nadrian ; Chaikin, Paul M. / Kinetics of DNA-coated sticky particles. In: Physical Review E. 2013 ; Vol. 88, No. 2.
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