How slaves affect a master module in gene transcription networks

Andras Gyorgy, Domitilla Del Vecchio

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

One of the major challenges in systems and synthetic biology is the lack of modular composition. Modules change their behavior once connected, due to retroactivity. In this paper, we build upon our earlier results and provide a theorem establishing how the dynamics of a master module change once slave modules are present. We quantify the change in the dynamics of the master module due to interconnection as a function of measurable biochemical parameters. Based on this, we provide a bound on the difference between the trajectories of the connected system and those of the isolated system by employing contraction theory. Therefore, we obtain a measure of robustness, which helps evaluating the degree of modularity in a system, while providing guidelines for robust module design. We illustrate the results by considering a recurring motif in gene transcription networks: An autorepressed gene regulating the expression of several downstream targets.

Original languageEnglish (US)
Title of host publication2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages6561-6567
Number of pages7
ISBN (Print)9781467357173
DOIs
StatePublished - Jan 1 2013
Event52nd IEEE Conference on Decision and Control, CDC 2013 - Florence, Italy
Duration: Dec 10 2013Dec 13 2013

Other

Other52nd IEEE Conference on Decision and Control, CDC 2013
CountryItaly
CityFlorence
Period12/10/1312/13/13

Fingerprint

Transcription
Genes
Gene
Module
Trajectories
Synthetic Biology
Chemical analysis
Systems Biology
Modularity
Interconnection
Contraction
Quantify
Trajectory
Robustness
Target
Theorem

ASJC Scopus subject areas

  • Control and Systems Engineering
  • Modeling and Simulation
  • Control and Optimization

Cite this

Gyorgy, A., & Del Vecchio, D. (2013). How slaves affect a master module in gene transcription networks. In 2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013 (pp. 6561-6567). [6760927] Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CDC.2013.6760927

How slaves affect a master module in gene transcription networks. / Gyorgy, Andras; Del Vecchio, Domitilla.

2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013. Institute of Electrical and Electronics Engineers Inc., 2013. p. 6561-6567 6760927.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gyorgy, A & Del Vecchio, D 2013, How slaves affect a master module in gene transcription networks. in 2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013., 6760927, Institute of Electrical and Electronics Engineers Inc., pp. 6561-6567, 52nd IEEE Conference on Decision and Control, CDC 2013, Florence, Italy, 12/10/13. https://doi.org/10.1109/CDC.2013.6760927
Gyorgy A, Del Vecchio D. How slaves affect a master module in gene transcription networks. In 2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013. Institute of Electrical and Electronics Engineers Inc. 2013. p. 6561-6567. 6760927 https://doi.org/10.1109/CDC.2013.6760927
Gyorgy, Andras ; Del Vecchio, Domitilla. / How slaves affect a master module in gene transcription networks. 2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013. Institute of Electrical and Electronics Engineers Inc., 2013. pp. 6561-6567
@inproceedings{d67f6279d5124ef6b79056db7572b49b,
title = "How slaves affect a master module in gene transcription networks",
abstract = "One of the major challenges in systems and synthetic biology is the lack of modular composition. Modules change their behavior once connected, due to retroactivity. In this paper, we build upon our earlier results and provide a theorem establishing how the dynamics of a master module change once slave modules are present. We quantify the change in the dynamics of the master module due to interconnection as a function of measurable biochemical parameters. Based on this, we provide a bound on the difference between the trajectories of the connected system and those of the isolated system by employing contraction theory. Therefore, we obtain a measure of robustness, which helps evaluating the degree of modularity in a system, while providing guidelines for robust module design. We illustrate the results by considering a recurring motif in gene transcription networks: An autorepressed gene regulating the expression of several downstream targets.",
author = "Andras Gyorgy and {Del Vecchio}, Domitilla",
year = "2013",
month = "1",
day = "1",
doi = "10.1109/CDC.2013.6760927",
language = "English (US)",
isbn = "9781467357173",
pages = "6561--6567",
booktitle = "2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013",
publisher = "Institute of Electrical and Electronics Engineers Inc.",

}

TY - GEN

T1 - How slaves affect a master module in gene transcription networks

AU - Gyorgy, Andras

AU - Del Vecchio, Domitilla

PY - 2013/1/1

Y1 - 2013/1/1

N2 - One of the major challenges in systems and synthetic biology is the lack of modular composition. Modules change their behavior once connected, due to retroactivity. In this paper, we build upon our earlier results and provide a theorem establishing how the dynamics of a master module change once slave modules are present. We quantify the change in the dynamics of the master module due to interconnection as a function of measurable biochemical parameters. Based on this, we provide a bound on the difference between the trajectories of the connected system and those of the isolated system by employing contraction theory. Therefore, we obtain a measure of robustness, which helps evaluating the degree of modularity in a system, while providing guidelines for robust module design. We illustrate the results by considering a recurring motif in gene transcription networks: An autorepressed gene regulating the expression of several downstream targets.

AB - One of the major challenges in systems and synthetic biology is the lack of modular composition. Modules change their behavior once connected, due to retroactivity. In this paper, we build upon our earlier results and provide a theorem establishing how the dynamics of a master module change once slave modules are present. We quantify the change in the dynamics of the master module due to interconnection as a function of measurable biochemical parameters. Based on this, we provide a bound on the difference between the trajectories of the connected system and those of the isolated system by employing contraction theory. Therefore, we obtain a measure of robustness, which helps evaluating the degree of modularity in a system, while providing guidelines for robust module design. We illustrate the results by considering a recurring motif in gene transcription networks: An autorepressed gene regulating the expression of several downstream targets.

UR - http://www.scopus.com/inward/record.url?scp=84902319219&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84902319219&partnerID=8YFLogxK

U2 - 10.1109/CDC.2013.6760927

DO - 10.1109/CDC.2013.6760927

M3 - Conference contribution

AN - SCOPUS:84902319219

SN - 9781467357173

SP - 6561

EP - 6567

BT - 2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013

PB - Institute of Electrical and Electronics Engineers Inc.

ER -