GiardiaDB and TrichDB

Integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis

Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jane M. Carlton, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Greg Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, John A. Miller, Hilary G. Morrison, Vishal Nayak & 8 others Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert, Steven Sullivan, Charles Treatman, Haiming Wang

Research output: Contribution to journalArticle

Abstract

GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data.

Original languageEnglish (US)
JournalNucleic Acids Research
Volume37
Issue numberSUPPL. 1
DOIs
StatePublished - 2009

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Trichomonas vaginalis
Giardia lamblia
Databases
Genome
Molecular Sequence Annotation
Amino Acid Motifs
Proteins

ASJC Scopus subject areas

  • Genetics

Cite this

GiardiaDB and TrichDB : Integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. / Aurrecoechea, Cristina; Brestelli, John; Brunk, Brian P.; Carlton, Jane M.; Dommer, Jennifer; Fischer, Steve; Gajria, Bindu; Gao, Xin; Gingle, Alan; Grant, Greg; Harb, Omar S.; Heiges, Mark; Innamorato, Frank; Iodice, John; Kissinger, Jessica C.; Kraemer, Eileen; Li, Wei; Miller, John A.; Morrison, Hilary G.; Nayak, Vishal; Pennington, Cary; Pinney, Deborah F.; Roos, David S.; Ross, Chris; Stoeckert, Christian J.; Sullivan, Steven; Treatman, Charles; Wang, Haiming.

In: Nucleic Acids Research, Vol. 37, No. SUPPL. 1, 2009.

Research output: Contribution to journalArticle

Aurrecoechea, C, Brestelli, J, Brunk, BP, Carlton, JM, Dommer, J, Fischer, S, Gajria, B, Gao, X, Gingle, A, Grant, G, Harb, OS, Heiges, M, Innamorato, F, Iodice, J, Kissinger, JC, Kraemer, E, Li, W, Miller, JA, Morrison, HG, Nayak, V, Pennington, C, Pinney, DF, Roos, DS, Ross, C, Stoeckert, CJ, Sullivan, S, Treatman, C & Wang, H 2009, 'GiardiaDB and TrichDB: Integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis', Nucleic Acids Research, vol. 37, no. SUPPL. 1. https://doi.org/10.1093/nar/gkn631
Aurrecoechea, Cristina ; Brestelli, John ; Brunk, Brian P. ; Carlton, Jane M. ; Dommer, Jennifer ; Fischer, Steve ; Gajria, Bindu ; Gao, Xin ; Gingle, Alan ; Grant, Greg ; Harb, Omar S. ; Heiges, Mark ; Innamorato, Frank ; Iodice, John ; Kissinger, Jessica C. ; Kraemer, Eileen ; Li, Wei ; Miller, John A. ; Morrison, Hilary G. ; Nayak, Vishal ; Pennington, Cary ; Pinney, Deborah F. ; Roos, David S. ; Ross, Chris ; Stoeckert, Christian J. ; Sullivan, Steven ; Treatman, Charles ; Wang, Haiming. / GiardiaDB and TrichDB : Integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. In: Nucleic Acids Research. 2009 ; Vol. 37, No. SUPPL. 1.
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AU - Brunk, Brian P.

AU - Carlton, Jane M.

AU - Dommer, Jennifer

AU - Fischer, Steve

AU - Gajria, Bindu

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AU - Gingle, Alan

AU - Grant, Greg

AU - Harb, Omar S.

AU - Heiges, Mark

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AU - Iodice, John

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AU - Kraemer, Eileen

AU - Li, Wei

AU - Miller, John A.

AU - Morrison, Hilary G.

AU - Nayak, Vishal

AU - Pennington, Cary

AU - Pinney, Deborah F.

AU - Roos, David S.

AU - Ross, Chris

AU - Stoeckert, Christian J.

AU - Sullivan, Steven

AU - Treatman, Charles

AU - Wang, Haiming

PY - 2009

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