Entrainment of a cellular circadian oscillator by light in the presence of molecular noise

Guanyu Wang, Charles Peskin

Research output: Contribution to journalArticle

Abstract

In this paper, we consider a stochastic molecular circadian oscillator described by a sequence of biological reactions and its deterministic kinetics governed by a system of ordinary differential equations in the limit of large numbers of molecules. The oscillations in the model are generated by negative feedback regulation of a gene. The focus of this paper is the entrainment of the oscillator by a periodic light signal that affects the maximal transcription rate of the gene. We introduce two scalings of the model parameters that provide independent control over the natural frequency of the oscillator and the relative noise level. We study entrainment in two ways: by visualizing the stochastic limit cycle in various projections of the discrete phase space of the system and by evaluating the maximum of the normalized cross correlation of the light signal with the number of protein molecules in the cell. The visualization method ignores the phase of the oscillator, and we find in this way that entrainment has a subtle organizing effect on the limit cycle as a whole. The cross correlation results reveal an interval of natural frequencies of the oscillator surrounding the frequency of the light signal within which maximal entrainment occurs with rather sharp drops in entrainment at the edges of this interval. The width of the interval of maximal entrainment increases with the amplitude of the light signal. These statements are applicable both to the stochastic oscillator and to its deterministic limit, but the results are most clear-cut in the deterministic case and degrade from there as the relative noise level increases.

Original languageEnglish (US)
Article number062416
JournalPhysical Review E
Volume97
Issue number6
DOIs
StatePublished - Jun 25 2018

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Entrainment
entrainment
oscillators
Cross-correlation
intervals
Natural Frequency
Limit Cycle
genes
cross correlation
Interval
resonant frequencies
Molecules
Gene
negative feedback
cycles
Negative Feedback
organizing
System of Ordinary Differential Equations
Transcription
molecules

ASJC Scopus subject areas

  • Statistical and Nonlinear Physics
  • Statistics and Probability
  • Condensed Matter Physics

Cite this

Entrainment of a cellular circadian oscillator by light in the presence of molecular noise. / Wang, Guanyu; Peskin, Charles.

In: Physical Review E, Vol. 97, No. 6, 062416, 25.06.2018.

Research output: Contribution to journalArticle

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