Drug binding by branched DNA

Selective interaction of tetrapyridyl porphyrins with an immobile junction

Min Lu, Qiu Guo, Robert F. Pasternack, Nadrian Seeman, Nadrian C. Seeman, Neville R. Kallenbach

Research output: Contribution to journalArticle

Abstract

The differential binding of a number of water-soluble cationic porphyrins to a branched DNA molecule is reported. Tetrakis(4-7V-methylpyridiniumyl)porphine (H2TMpyP-4) interacts near the branch point with an immobile DNA junction formed from four 16-mer strands. Its Cu(II) and Ni(II) derivatives show stronger preferential binding in the neighborhood of the branch point. Axially liganded derivatives, Zn, Co, and Mn, also interact near this branch point, but in a different way. We use the reagents methidiumpropyl-EDTA·Fe(II) [MPE-Fe(II)] and bis(o-phenanthroline)copper(I) [(OP)2Cu(I)] to cleave complexes of DNA duplex controls and the junction with these porphyrins. The resulting cleavage patterns are consistent with previous evidence that the branch point provides a strong site for intercalative binding agents, which is not available in unbranched duplexes of identical sequence. The preferential scission by (OP)2Cu(I) in the presence of Ni and Cu porphyrins near the branch point exceeds that seen for any agents we have studied. This hyperreactivity is not seen in the case of porphyrins with axial ligands, ZnTMpyP-4, CoTMpyP-4, and MnTMpyP-4, although these also interact near the branch point. The Zn derivative tends to protect sites close to the branch point from cutting, while the Co and Mn porphyrins moderately enhance cleavage of sites in this region.

Original languageEnglish (US)
Pages (from-to)1614-1624
Number of pages11
JournalBiochemistry
Volume29
Issue number6
StatePublished - 1990

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Porphyrins
DNA
Pharmaceutical Preparations
Derivatives
Copper
Binding Sites
Ligands
Molecules
Water
1,10-phenanthroline

ASJC Scopus subject areas

  • Biochemistry

Cite this

Lu, M., Guo, Q., Pasternack, R. F., Seeman, N., Seeman, N. C., & Kallenbach, N. R. (1990). Drug binding by branched DNA: Selective interaction of tetrapyridyl porphyrins with an immobile junction. Biochemistry, 29(6), 1614-1624.

Drug binding by branched DNA : Selective interaction of tetrapyridyl porphyrins with an immobile junction. / Lu, Min; Guo, Qiu; Pasternack, Robert F.; Seeman, Nadrian; Seeman, Nadrian C.; Kallenbach, Neville R.

In: Biochemistry, Vol. 29, No. 6, 1990, p. 1614-1624.

Research output: Contribution to journalArticle

Lu, M, Guo, Q, Pasternack, RF, Seeman, N, Seeman, NC & Kallenbach, NR 1990, 'Drug binding by branched DNA: Selective interaction of tetrapyridyl porphyrins with an immobile junction', Biochemistry, vol. 29, no. 6, pp. 1614-1624.
Lu, Min ; Guo, Qiu ; Pasternack, Robert F. ; Seeman, Nadrian ; Seeman, Nadrian C. ; Kallenbach, Neville R. / Drug binding by branched DNA : Selective interaction of tetrapyridyl porphyrins with an immobile junction. In: Biochemistry. 1990 ; Vol. 29, No. 6. pp. 1614-1624.
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