Direct synthesis and identification of benzo[a]pyrene diol epoxide-deoxyguanosine binding sites in modified oligodeoxynucleotides

Bing Mao, Leonid A. Margulis, Bin Li, Victor Ibanez, Hongmee Lee, Ronald G. Harvey, Nicholas Geacintov

Research output: Contribution to journalArticle

Abstract

Adducts derived from the reaction of the benzo[a]pyrene metabolite model compound (+)-anti-7β,8α-dihydroxy-9α,10α-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene [(+)-BPDE] with the single-stranded oligodeoxynucleotide 5′-d(TATGCGTAT) were obtained according to direct synthesis techniques described earlier [Cosman, M., Ibanez, V., Geacintov, N. E., and Harvey, R. G. (1990) Carcinogenesis 11, 1667-1672]. Four major adducts, involving trans and cis addition (trans/cis adduct ratio ≈ 4.5) of (+)-BPDE to the exocyclic amino groups of guanines G4 and G6 (the numbers denote the positions of the guanines counted from the 5′-side) were obtained. These adducts can be separated from one another by reverse-phase high-performance liquid chromatography methods. The site of BPDE binding on either G4 or G6 can be determined from the electrophoresis band patterns on 20% polyacrylamide gels of the BPDE-modified oligonucleotides subjected to the G+A and G Maxam-Gilbert strand cleavage reactions [Maxam, A. M., and Gilbert, W. (1980) Methods. Enzymol. 65, 499-560]. The electrophoresis gel band patterns are different for unmodified DNA and the two different BPDE-modified oligonucleotides because (1) the strand cleavage fragments bearing BPDE residues migrate slower than the corresponding fragments derived from the unmodified oligonucleotide and (2) strand cleavage tends to be inhibited on the 5′-sides of BPDE-modified guanines in the G+A, but not the G reaction.

Original languageEnglish (US)
Pages (from-to)773-778
Number of pages6
JournalChemical Research in Toxicology
Volume5
Issue number6
StatePublished - 1992

Fingerprint

7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
Deoxyguanosine
Oligodeoxyribonucleotides
Benzo(a)pyrene
Epoxy Compounds
Binding Sites
Guanine
Oligonucleotides
Electrophoresis
Bearings (structural)
High performance liquid chromatography
Reverse-Phase Chromatography
Metabolites
Carcinogenesis
Gels
High Pressure Liquid Chromatography

ASJC Scopus subject areas

  • Drug Discovery
  • Organic Chemistry
  • Chemistry(all)
  • Toxicology
  • Health, Toxicology and Mutagenesis

Cite this

Direct synthesis and identification of benzo[a]pyrene diol epoxide-deoxyguanosine binding sites in modified oligodeoxynucleotides. / Mao, Bing; Margulis, Leonid A.; Li, Bin; Ibanez, Victor; Lee, Hongmee; Harvey, Ronald G.; Geacintov, Nicholas.

In: Chemical Research in Toxicology, Vol. 5, No. 6, 1992, p. 773-778.

Research output: Contribution to journalArticle

Mao, Bing ; Margulis, Leonid A. ; Li, Bin ; Ibanez, Victor ; Lee, Hongmee ; Harvey, Ronald G. ; Geacintov, Nicholas. / Direct synthesis and identification of benzo[a]pyrene diol epoxide-deoxyguanosine binding sites in modified oligodeoxynucleotides. In: Chemical Research in Toxicology. 1992 ; Vol. 5, No. 6. pp. 773-778.
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AU - Ibanez, Victor

AU - Lee, Hongmee

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