Detection of Zika virus using reverse-transcription LAMP coupled with reverse dot blot analysis in saliva

Maite Sabalza, Rubina Yasmin, Cheryl A. Barber, Talita Castro, Daniel Malamud, Beum Jun Kim, Hui Zhu, Richard A. Montagna, William R. Abrams

Research output: Contribution to journalArticle

Abstract

In recent years, there have been increasing numbers of infectious disease outbreaks that spread rapidly to population centers resulting from global travel, population vulnerabilities, environmental factors, and ecological disasters such as floods and earthquakes. Some examples of the recent outbreaks are the Ebola epidemic in West Africa, Middle East respiratory syndrome coronavirus (MERS-Co) in the Middle East, and the Zika outbreak through the Americas. We have created a generic protocol for detection of pathogen RNA and/or DNA using loop-mediated isothermal amplification (LAMP) and reverse dot-blot for detection (RDB) and processed automatically in a microfluidic device. In particular, we describe how a microfluidic assay to detect HIV viral RNA was converted to detect Zika virus (ZIKV) RNA. We first optimized the RT-LAMP assay to detect ZIKV RNA using a benchtop isothermal amplification device. Then we implemented the assay in a microfluidic device that will allow analyzing 24 samples simultaneously and automatically from sample introduction to detection by RDB technique. Preliminary data using saliva samples spiked with ZIKV showed that our diagnostic system detects ZIKV RNA in saliva. These results will be validated in further experiments with well-characterized ZIKV human specimens of saliva. The described strategy and methodology to convert the HIV diagnostic assay and platform to a ZIKV RNA detection assay provides a model that can be readily utilized for detection of the next emerging or re-emerging infectious disease.

Original languageEnglish (US)
Article numbere0192398
JournalPLoS One
Volume13
Issue number2
DOIs
StatePublished - Feb 1 2018

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Zika virus
Transcription
saliva
Viruses
Saliva
Reverse Transcription
Amplification
RNA
Lab-On-A-Chip Devices
Assays
Microfluidics
Disease Outbreaks
assays
microbial detection
HIV
Emerging Communicable Diseases
Earthquakes
Western Africa
Middle East
emerging diseases

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Detection of Zika virus using reverse-transcription LAMP coupled with reverse dot blot analysis in saliva. / Sabalza, Maite; Yasmin, Rubina; Barber, Cheryl A.; Castro, Talita; Malamud, Daniel; Kim, Beum Jun; Zhu, Hui; Montagna, Richard A.; Abrams, William R.

In: PLoS One, Vol. 13, No. 2, e0192398, 01.02.2018.

Research output: Contribution to journalArticle

Sabalza, M, Yasmin, R, Barber, CA, Castro, T, Malamud, D, Kim, BJ, Zhu, H, Montagna, RA & Abrams, WR 2018, 'Detection of Zika virus using reverse-transcription LAMP coupled with reverse dot blot analysis in saliva', PLoS One, vol. 13, no. 2, e0192398. https://doi.org/10.1371/journal.pone.0192398
Sabalza, Maite ; Yasmin, Rubina ; Barber, Cheryl A. ; Castro, Talita ; Malamud, Daniel ; Kim, Beum Jun ; Zhu, Hui ; Montagna, Richard A. ; Abrams, William R. / Detection of Zika virus using reverse-transcription LAMP coupled with reverse dot blot analysis in saliva. In: PLoS One. 2018 ; Vol. 13, No. 2.
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