Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil

Feng Shi, Pew Thian Yap, Yong Fan, Jie Zhi Cheng, Lawrence L. Wald, Guido Gerig, Weili Lin, Dinggang Shen, Lab Idea

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Abstract

    The acquisition of high quality MR images of neonatal brains is largely hampered by their characteristically small head size and low tissue contrast. As a result, subsequent image processing and analysis, especially for brain tissue segmentation, are often hindered. To overcome this problem, a dedicated phased array neonatal head coil is utilized to improve MR image quality by effectively combing images obtained from 8 coil elements without lengthening data acquisition time. In addition, a subject-specific atlas based tissue segmentation algorithm is specifically developed for the delineation of fine structures in the acquired neonatal brain MR images. The proposed tissue segmentation method first enhances the sheet-like cortical gray matter (GM) structures in neonatal images with a Hessian filter for generation of cortical GM prior. Then, the prior is combined with our neonatal population atlas to form a cortical enhanced hybrid atlas, which we refer to as the subject-specific atlas. Various experiments are conducted to compare the proposed method with manual segmentation results, as well as with additional two population atlas based segmentation methods. Results show that the proposed method is capable of segmenting the neonatal brain with the highest accuracy, compared to other two methods.

    Original languageEnglish (US)
    Title of host publication2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009
    Pages39-45
    Number of pages7
    DOIs
    StatePublished - 2009
    Event2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009 - Miami, FL, United States
    Duration: Jun 20 2009Jun 25 2009

    Other

    Other2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009
    CountryUnited States
    CityMiami, FL
    Period6/20/096/25/09

    Fingerprint

    Brain
    Tissue
    Image analysis
    Image quality
    Data acquisition
    Image processing
    Experiments

    ASJC Scopus subject areas

    • Computer Vision and Pattern Recognition
    • Biomedical Engineering

    Cite this

    Shi, F., Yap, P. T., Fan, Y., Cheng, J. Z., Wald, L. L., Gerig, G., ... Idea, L. (2009). Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil. In 2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009 (pp. 39-45). [5204348] https://doi.org/10.1109/CVPR.2009.5204348

    Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil. / Shi, Feng; Yap, Pew Thian; Fan, Yong; Cheng, Jie Zhi; Wald, Lawrence L.; Gerig, Guido; Lin, Weili; Shen, Dinggang; Idea, Lab.

    2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009. 2009. p. 39-45 5204348.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Shi, F, Yap, PT, Fan, Y, Cheng, JZ, Wald, LL, Gerig, G, Lin, W, Shen, D & Idea, L 2009, Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil. in 2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009., 5204348, pp. 39-45, 2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009, Miami, FL, United States, 6/20/09. https://doi.org/10.1109/CVPR.2009.5204348
    Shi F, Yap PT, Fan Y, Cheng JZ, Wald LL, Gerig G et al. Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil. In 2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009. 2009. p. 39-45. 5204348 https://doi.org/10.1109/CVPR.2009.5204348
    Shi, Feng ; Yap, Pew Thian ; Fan, Yong ; Cheng, Jie Zhi ; Wald, Lawrence L. ; Gerig, Guido ; Lin, Weili ; Shen, Dinggang ; Idea, Lab. / Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil. 2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009. 2009. pp. 39-45
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