Correction to

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)

Alexa B.R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Henaff, Noah Alexander, Samuel S. Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail L. Rosen, Christopher E. Mason

Research output: Contribution to journalComment/debate

Abstract

Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.

Original languageEnglish (US)
Article number72
JournalGenome Biology
Volume20
Issue number1
DOIs
StatePublished - Apr 5 2019

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Benchmarking
Metagenomics
benchmarking
genome
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Biological Sciences
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Databases
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analysis
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ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

Cite this

Correction to : Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7). / McIntyre, Alexa B.R.; Ounit, Rachid; Afshinnekoo, Ebrahim; Prill, Robert J.; Henaff, Elizabeth; Alexander, Noah; Minot, Samuel S.; Danko, David; Foox, Jonathan; Ahsanuddin, Sofia; Tighe, Scott; Hasan, Nur A.; Subramanian, Poorani; Moffat, Kelly; Levy, Shawn; Lonardi, Stefano; Greenfield, Nick; Colwell, Rita R.; Rosen, Gail L.; Mason, Christopher E.

In: Genome Biology, Vol. 20, No. 1, 72, 05.04.2019.

Research output: Contribution to journalComment/debate

McIntyre, ABR, Ounit, R, Afshinnekoo, E, Prill, RJ, Henaff, E, Alexander, N, Minot, SS, Danko, D, Foox, J, Ahsanuddin, S, Tighe, S, Hasan, NA, Subramanian, P, Moffat, K, Levy, S, Lonardi, S, Greenfield, N, Colwell, RR, Rosen, GL & Mason, CE 2019, 'Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)', Genome Biology, vol. 20, no. 1, 72. https://doi.org/10.1186/s13059-019-1687-2
McIntyre, Alexa B.R. ; Ounit, Rachid ; Afshinnekoo, Ebrahim ; Prill, Robert J. ; Henaff, Elizabeth ; Alexander, Noah ; Minot, Samuel S. ; Danko, David ; Foox, Jonathan ; Ahsanuddin, Sofia ; Tighe, Scott ; Hasan, Nur A. ; Subramanian, Poorani ; Moffat, Kelly ; Levy, Shawn ; Lonardi, Stefano ; Greenfield, Nick ; Colwell, Rita R. ; Rosen, Gail L. ; Mason, Christopher E. / Correction to : Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7). In: Genome Biology. 2019 ; Vol. 20, No. 1.
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abstract = "Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.",
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AU - Ounit, Rachid

AU - Afshinnekoo, Ebrahim

AU - Prill, Robert J.

AU - Henaff, Elizabeth

AU - Alexander, Noah

AU - Minot, Samuel S.

AU - Danko, David

AU - Foox, Jonathan

AU - Ahsanuddin, Sofia

AU - Tighe, Scott

AU - Hasan, Nur A.

AU - Subramanian, Poorani

AU - Moffat, Kelly

AU - Levy, Shawn

AU - Lonardi, Stefano

AU - Greenfield, Nick

AU - Colwell, Rita R.

AU - Rosen, Gail L.

AU - Mason, Christopher E.

PY - 2019/4/5

Y1 - 2019/4/5

N2 - Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.

AB - Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.

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