Computational analysis of hot spots and binding mechanism in the PD-1/PD-L1 interaction

Dading Huang, Wei Wen, Xiao Liu, Yang Li, John Zhang

Research output: Contribution to journalArticle

Abstract

Programmed cell death protein-1 (PD-1) is an important immunological checkpoint and plays a vital role in maintaining the peripheral tolerance of the human body by interacting with its ligand PD-L1. The overexpression of PD-L1 in tumor cells induces local immune suppression and helps the tumor cells to evade the endogenous anti-tumor immunity. Developing monoclonal antibodies against the PD-1/PD-L1 protein-protein interaction to block the PD-1/PD-L1 signaling pathway has demonstrated superior anti-tumor efficacy in a variety of solid tumors and has made a profound impact on the field of cancer immunotherapy in recent years. Although the X-ray crystal structure of the PD-1/PD-L1 complex has been solved, the detailed binding mechanism of the PD-1/PD-L1 interaction is not fully understood from a theoretical point of view. In this study, we performed computational alanine scanning on the PD-1/PD-L1 complex to quantitatively identify the hot spots in the PD-1/PD-L1 interaction and characterize its binding mechanisms at the atomic level. To the best of our knowledge, this is the first time that theoretical calculations have been used to systematically and quantitatively predict the hot spots in the PD-1/PD-L1 interaction. We hope that the predicted hot spots and the energy profile of the PD-1/PD-L1 interaction presented in this work can provide guidance for the design of peptide and small molecule drugs targeting PD-1 or PD-L1.

Original languageEnglish (US)
Pages (from-to)14944-14956
Number of pages13
JournalRSC Advances
Volume9
Issue number26
DOIs
StatePublished - Jan 1 2019

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Tumors
Proteins
Programmed Cell Death 1 Receptor
Cells
Monoclonal antibodies
Cell death
Alanine
Peptides
Crystal structure
Ligands
Monoclonal Antibodies
Scanning
X rays
Molecules

ASJC Scopus subject areas

  • Chemistry(all)
  • Chemical Engineering(all)

Cite this

Computational analysis of hot spots and binding mechanism in the PD-1/PD-L1 interaction. / Huang, Dading; Wen, Wei; Liu, Xiao; Li, Yang; Zhang, John.

In: RSC Advances, Vol. 9, No. 26, 01.01.2019, p. 14944-14956.

Research output: Contribution to journalArticle

Huang, Dading ; Wen, Wei ; Liu, Xiao ; Li, Yang ; Zhang, John. / Computational analysis of hot spots and binding mechanism in the PD-1/PD-L1 interaction. In: RSC Advances. 2019 ; Vol. 9, No. 26. pp. 14944-14956.
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