Closed and open source neuroimage analysis tools and libraries at UNC

Martin Styner, Matthieu Jomier, Guido Gerig

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Abstract

    The emergence of open-source libraries and development tools in the last decade has changed the process of academic software development in many ways. In medical image processing and visualization this change is especially evident, also because open source projects are actively furthered by grant funding institutions. This manuscript presents the use of such development tools and libraries at the UNC Neuro-Image Analysis Laboratory for open source applications and tools. We have also experienced in our research that the development of open source in academics raises the issue of access to unpublished methodology. The strategy at our laboratory is to combine all in-house libraries and applications into a single repository that consists of two parts: a fully open source part that is distributed under a Berkley-style license and a private, closed source part with unpublished tools and methods. Access to the open source part is unrestricted, whereas the private parts can only be downloaded via cvs user login. This setup solved our issues regarding unpublished methodology, as migration from the private to the open source part is very simple. Overall our experience with this development environment within the academic setting is very positive.

    Original languageEnglish (US)
    Title of host publication2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings
    Pages702-705
    Number of pages4
    Volume2006
    StatePublished - 2006
    Event2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Arlington, VA, United States
    Duration: Apr 6 2006Apr 9 2006

    Other

    Other2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro
    CountryUnited States
    CityArlington, VA
    Period4/6/064/9/06

    Fingerprint

    Medical image processing
    Image analysis
    Software engineering
    Visualization

    ASJC Scopus subject areas

    • Engineering(all)

    Cite this

    Styner, M., Jomier, M., & Gerig, G. (2006). Closed and open source neuroimage analysis tools and libraries at UNC. In 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings (Vol. 2006, pp. 702-705). [1625013]

    Closed and open source neuroimage analysis tools and libraries at UNC. / Styner, Martin; Jomier, Matthieu; Gerig, Guido.

    2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. Vol. 2006 2006. p. 702-705 1625013.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Styner, M, Jomier, M & Gerig, G 2006, Closed and open source neuroimage analysis tools and libraries at UNC. in 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. vol. 2006, 1625013, pp. 702-705, 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, VA, United States, 4/6/06.
    Styner M, Jomier M, Gerig G. Closed and open source neuroimage analysis tools and libraries at UNC. In 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. Vol. 2006. 2006. p. 702-705. 1625013
    Styner, Martin ; Jomier, Matthieu ; Gerig, Guido. / Closed and open source neuroimage analysis tools and libraries at UNC. 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. Vol. 2006 2006. pp. 702-705
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