Adaptive multirate data acquisition of 3D cell images

T. E. Merryman, Jelena Kovacevic, E. Garcia Osuna, R. F. Murphy

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

We present an algorithm for efficient acquisition of fluorescence microscopy data sets, a problem not addressed until now in the literature. We do this as part of a larger system for protein classification based on their subcellular location patterns, and thus strive to maintain the achieved level of classification accuracy as much as possible. This problem is similar to image compression but unique due to additional restrictions, namely causality; we have access only to the information that has been scanned up to that point. While we do want to acquire fewer samples with as low distortion as possible to achieve compression, our goal is to do so while affecting the overall classification accuracy as little as possible. We achieve this by using an adaptive multiresolution scanning scheme which samples the regions of the image area that hold the most pertinent information. Our results show that we can achieve significant compression which we can then use to increase either time of space resolution of our data set, all while minimally affecting the classification accuracy of the entire system.

Original languageEnglish (US)
Title of host publication2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05 - Proceedings - Image and Multidimensional Signal Processing Multimedia Signal Processing
VolumeII
DOIs
StatePublished - Dec 1 2005
Event2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05 - Philadelphia, PA, United States
Duration: Mar 18 2005Mar 23 2005

Other

Other2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05
CountryUnited States
CityPhiladelphia, PA
Period3/18/053/23/05

Fingerprint

data acquisition
Data acquisition
cells
Fluorescence microscopy
Image compression
constrictions
acquisition
microscopy
proteins
Proteins
Scanning
fluorescence
scanning

ASJC Scopus subject areas

  • Electrical and Electronic Engineering
  • Signal Processing
  • Acoustics and Ultrasonics

Cite this

Merryman, T. E., Kovacevic, J., Osuna, E. G., & Murphy, R. F. (2005). Adaptive multirate data acquisition of 3D cell images. In 2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05 - Proceedings - Image and Multidimensional Signal Processing Multimedia Signal Processing (Vol. II). [1415359] https://doi.org/10.1109/ICASSP.2005.1415359

Adaptive multirate data acquisition of 3D cell images. / Merryman, T. E.; Kovacevic, Jelena; Osuna, E. Garcia; Murphy, R. F.

2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05 - Proceedings - Image and Multidimensional Signal Processing Multimedia Signal Processing. Vol. II 2005. 1415359.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Merryman, TE, Kovacevic, J, Osuna, EG & Murphy, RF 2005, Adaptive multirate data acquisition of 3D cell images. in 2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05 - Proceedings - Image and Multidimensional Signal Processing Multimedia Signal Processing. vol. II, 1415359, 2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05, Philadelphia, PA, United States, 3/18/05. https://doi.org/10.1109/ICASSP.2005.1415359
Merryman TE, Kovacevic J, Osuna EG, Murphy RF. Adaptive multirate data acquisition of 3D cell images. In 2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05 - Proceedings - Image and Multidimensional Signal Processing Multimedia Signal Processing. Vol. II. 2005. 1415359 https://doi.org/10.1109/ICASSP.2005.1415359
Merryman, T. E. ; Kovacevic, Jelena ; Osuna, E. Garcia ; Murphy, R. F. / Adaptive multirate data acquisition of 3D cell images. 2005 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP '05 - Proceedings - Image and Multidimensional Signal Processing Multimedia Signal Processing. Vol. II 2005.
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