A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey Ling Kao, Anne Sophie de Smet, Haidong Wang, Anne Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu FanMike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, A. Keith Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal

Research output: Contribution to journalArticle

Abstract

Many protein-protein interactions are mediated through independently folding modular domains. Proteome-wide efforts to model protein-protein interaction or "interactome" networks have largely ignored this modular organization of proteins. We developed an experimental strategy to efficiently identify interaction domains and generated a domain-based interactome network for proteins involved in C. elegans early-embryonic cell divisions. Minimal interacting regions were identified for over 200 proteins, providing important information on their domain organization. Furthermore, our approach increased the sensitivity of the two-hybrid system, resulting in a more complete interactome network. This interactome modeling strategy revealed insights into C. elegans centrosome function and is applicable to other biological processes in this and other organisms.

Original languageEnglish (US)
Pages (from-to)534-545
Number of pages12
JournalCell
Volume134
Issue number3
DOIs
StatePublished - Aug 8 2008

Fingerprint

Embryonic Development
Proteins
Biological Phenomena
Centrosome
Proteome
Protein Domains
Hybrid systems
Cell Division
Cells

Keywords

  • PROTEINS

ASJC Scopus subject areas

  • Cell Biology
  • Molecular Biology

Cite this

Boxem, M., Maliga, Z., Klitgord, N., Li, N., Lemmens, I., Mana, M., ... Vidal, M. (2008). A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis. Cell, 134(3), 534-545. https://doi.org/10.1016/j.cell.2008.07.009

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis. / Boxem, Mike; Maliga, Zoltan; Klitgord, Niels; Li, Na; Lemmens, Irma; Mana, Miyeko; de Lichtervelde, Lorenzo; Mul, Joram D.; van de Peut, Diederik; Devos, Maxime; Simonis, Nicolas; Yildirim, Muhammed A.; Cokol, Murat; Kao, Huey Ling; de Smet, Anne Sophie; Wang, Haidong; Schlaitz, Anne Lore; Hao, Tong; Milstein, Stuart; Fan, Changyu; Tipsword, Mike; Drew, Kevin; Galli, Matilde; Rhrissorrakrai, Kahn; Drechsel, David; Koller, Daphne; Roth, Frederick P.; Iakoucheva, Lilia M.; Dunker, A. Keith; Bonneau, Richard; Gunsalus, Kristin C.; Hill, David E.; Piano, Fabio; Tavernier, Jan; van den Heuvel, Sander; Hyman, Anthony A.; Vidal, Marc.

In: Cell, Vol. 134, No. 3, 08.08.2008, p. 534-545.

Research output: Contribution to journalArticle

Boxem, M, Maliga, Z, Klitgord, N, Li, N, Lemmens, I, Mana, M, de Lichtervelde, L, Mul, JD, van de Peut, D, Devos, M, Simonis, N, Yildirim, MA, Cokol, M, Kao, HL, de Smet, AS, Wang, H, Schlaitz, AL, Hao, T, Milstein, S, Fan, C, Tipsword, M, Drew, K, Galli, M, Rhrissorrakrai, K, Drechsel, D, Koller, D, Roth, FP, Iakoucheva, LM, Dunker, AK, Bonneau, R, Gunsalus, KC, Hill, DE, Piano, F, Tavernier, J, van den Heuvel, S, Hyman, AA & Vidal, M 2008, 'A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis', Cell, vol. 134, no. 3, pp. 534-545. https://doi.org/10.1016/j.cell.2008.07.009
Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M et al. A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis. Cell. 2008 Aug 8;134(3):534-545. https://doi.org/10.1016/j.cell.2008.07.009
Boxem, Mike ; Maliga, Zoltan ; Klitgord, Niels ; Li, Na ; Lemmens, Irma ; Mana, Miyeko ; de Lichtervelde, Lorenzo ; Mul, Joram D. ; van de Peut, Diederik ; Devos, Maxime ; Simonis, Nicolas ; Yildirim, Muhammed A. ; Cokol, Murat ; Kao, Huey Ling ; de Smet, Anne Sophie ; Wang, Haidong ; Schlaitz, Anne Lore ; Hao, Tong ; Milstein, Stuart ; Fan, Changyu ; Tipsword, Mike ; Drew, Kevin ; Galli, Matilde ; Rhrissorrakrai, Kahn ; Drechsel, David ; Koller, Daphne ; Roth, Frederick P. ; Iakoucheva, Lilia M. ; Dunker, A. Keith ; Bonneau, Richard ; Gunsalus, Kristin C. ; Hill, David E. ; Piano, Fabio ; Tavernier, Jan ; van den Heuvel, Sander ; Hyman, Anthony A. ; Vidal, Marc. / A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis. In: Cell. 2008 ; Vol. 134, No. 3. pp. 534-545.
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AU - Mana, Miyeko

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AU - Roth, Frederick P.

AU - Iakoucheva, Lilia M.

AU - Dunker, A. Keith

AU - Bonneau, Richard

AU - Gunsalus, Kristin C.

AU - Hill, David E.

AU - Piano, Fabio

AU - Tavernier, Jan

AU - van den Heuvel, Sander

AU - Hyman, Anthony A.

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