A detailed predictive model of the mammalian circadian clock

Daniel B. Forger, Charles Peskin

Research output: Contribution to journalArticle

Abstract

Experimental data on the circadian (≈24-h) clock in mammalian cells are vast, diverse, and detailed. Mathematical models are therefore needed to piece these data together and to study overall clock behavior. Previous models have focused on Neurospora or Drosophila or can be converted to a Drosophila model simply by renaming variables. Those models used Hill-type terms for transcription regulation and Michaelis-Menten type or delay terms for posttranslation regulation. Recent mammalian experimental data call into question some of the assumptions in these approaches. Moreover, gene duplication has led to more proteins in the mammalian system than in lower organisms. Here we develop a detailed distinctly mammalian model by using mass action kinetics. Parameters for our model are found from experimental data by using a coordinate search method. The model accurately predicts the phase of entrainment, amplitude of oscillation, and shape of time profiles of clock mRNAs and proteins and is also robust to parameter changes and mutations.

Original languageEnglish (US)
Pages (from-to)14806-14811
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume100
Issue number25
DOIs
StatePublished - Dec 9 2003

Fingerprint

Circadian Clocks
Drosophila
Theoretical Models
Neurospora
Gene Duplication
Proteins
Messenger RNA
Mutation

Keywords

  • CLOCK
  • CRY
  • Eukaryotic transcription regulation
  • Mathematical models
  • PER

ASJC Scopus subject areas

  • Genetics
  • General

Cite this

A detailed predictive model of the mammalian circadian clock. / Forger, Daniel B.; Peskin, Charles.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 25, 09.12.2003, p. 14806-14811.

Research output: Contribution to journalArticle

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