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Shady Amin

Assistant Professor of Biology with Chemistry Affiliation

    20072020
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    Research Output 2007 2020

    2020

    A quick method for obtaining high-quality DNA barcodes without DNA extraction in microalgae

    Fei, C., Zou, S., Wang, T., Wang, C., Kemuma, N. D., He, M., Amin, S. A. & Wang, C., Jan 1 2020, (Accepted/In press) In : Journal of Applied Phycology.

    Research output: Contribution to journalArticle

    DNA barcoding
    microalgae
    polymerase chain reaction
    DNA
    methodology
    2019

    Isolation of biologically active compounds from mangrove sediments

    Solntsev, K. M., Schramm, S., Kremb, S., Gunsalus, K. & Amin, S., Jan 1 2019, In : Analytical and Bioanalytical Chemistry.

    Research output: Contribution to journalComment/debate

    Open Access
    Sediments
    2018

    Accumulation of NO2-cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the eastern tropical North Pacific

    Heal, K. R., Qin, W., Amin, S., Devol, A. H., Moffett, J. W., Armbrust, E. V., Stahl, D. A. & Ingalls, A. E., Aug 1 2018, In : Environmental Microbiology Reports. 10, 4, p. 453-457 5 p.

    Research output: Contribution to journalArticle

    Archaea
    vitamin B12
    Vitamin B 12
    Ammonia
    ammonia

    Bacterial communities of diatoms display strong conservation across strains and time

    Behringer, G., Ochsenkühn, M. A., Fei, C., Fanning, J., Koester, J. A. & Amin, S., Apr 6 2018, In : Frontiers in Microbiology. 9, APR, 659.

    Research output: Contribution to journalArticle

    Diatoms
    Phytoplankton
    Bacteria
    Roseobacter
    Microbiota

    Coral metabolite gradients affect microbial community structures and act as a disease cue

    Ochsenkühn, M. A., Schmitt-Kopplin, P., Harir, M. & Amin, S., Dec 1 2018, In : Communications Biology. 1, 1, 184.

    Research output: Contribution to journalArticle

    Open Access
    Anthozoa
    Metabolites
    Cues
    microbial communities
    corals

    Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations

    Qin, W., Amin, S., Lundeen, R. A., Heal, K. R., Martens-Habbena, W., Turkarslan, S., Urakawa, H., Costa, K. C., Hendrickson, E. L., Wang, T., Beck, D. A., Tiquia-Arashiro, S. M., Taub, F., Holmes, A. D., Vajrala, N., Berube, P. M., Lowe, T. M., Moffett, J. W., Devol, A. H., Baliga, N. S. & 6 others, Arp, D. J., Sayavedra-Soto, L. A., Hackett, M., Armbrust, E. V., Ingalls, A. E. & Stahl, D. A., Feb 1 2018, In : ISME Journal. 12, 2, p. 508-519 12 p.

    Research output: Contribution to journalArticle

    Archaea
    physiological state
    Ammonia
    stress response
    ammonia
    2017

    Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammoniaoxidizing archaea of the phylum thaumarchaeo

    Qin, W., Heal, K. R., Ramdasi, R., Kobelt, J. N., Martens-Habbena, W., Bertagnolli, A. D., Amin, S., Walker, C. B., Urakawa, H., Könneke, M., Devol, A. H., Moffett, J. W., Armbrust, E. V., Jensen, G. J., Ingalls, A. E. & Stahl, D. A., Dec 1 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 12, p. 5067-5079 13 p., 002416.

    Research output: Contribution to journalArticle

    Archaea
    Ammonia
    ammonia
    new species
    Thiamine

    Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system

    Durham, B. P., Dearth, S. P., Sharma, S., Amin, S., Smith, C. B., Campagna, S. R., Armbrust, E. V. & Moran, M. A., Sep 1 2017, In : Environmental Microbiology. 19, 9, p. 3500-3513 14 p.

    Research output: Contribution to journalArticle

    Diatoms
    Phytoplankton
    Bacillariophyceae
    metabolite
    diatom

    Ubiquitous marine bacterium inhibits diatom cell division

    Van Tol, H. M., Amin, S. & Virginia Armbrust, E., Jan 1 2017, In : ISME Journal. 11, 1, p. 31-42 12 p.

    Research output: Contribution to journalArticle

    Diatoms
    Bacillariophyceae
    Cell Division
    cell division
    diatom

    Zooming in on the phycosphere: The ecological interface for phytoplankton-bacteria relationships

    Seymour, J. R., Amin, S., Raina, J. B. & Stocker, R., May 30 2017, In : Nature Microbiology. 2, 17065.

    Research output: Contribution to journalReview article

    Phytoplankton
    Bacteria
    Ecosystem
    Symbiosis
    Food-Drug Interactions
    2015

    Cryptic carbon and sulfur cycling between surface ocean plankton

    Durham, B. P., Sharma, S., Luo, H., Smith, C. B., Amin, S., Bender, S. J., Dearth, S. P., Van Mooy, B. A. S., Campagna, S. R., Kujawinski, E. B., Armbrust, E. V. & Moran, M. A., Jan 13 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 2, p. 453-457 5 p.

    Research output: Contribution to journalArticle

    Plankton
    Diatoms
    Sulfur
    Oceans and Seas
    Roseobacter

    Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

    Amin, S., Hmelo, L. R., Van Tol, H. M., Durham, B. P., Carlson, L. T., Heal, K. R., Morales, R. L., Berthiaume, C. T., Parker, M. S., Djunaedi, B., Ingalls, A. E., Parsek, M. R., Moran, M. A. & Armbrust, E. V., Jun 4 2015, In : Nature. 522, 7554, p. 98-101 4 p.

    Research output: Contribution to journalArticle

    Diatoms
    Phytoplankton
    Bacteria
    Tryptophan
    Ecosystem
    2014

    Assessment of the potential for copper limitation of ammonia oxidation by Archaea in a dynamic estuary

    Jacquot, J. E., Horak, R. E. A., Amin, S., Devol, A. H., Ingalls, A. E., Armbrust, E. V., Stahl, D. A. & Moffett, J. W., May 20 2014, In : Marine Chemistry. 162, p. 37-49 13 p.

    Research output: Contribution to journalArticle

    Estuaries
    Ammonia
    Copper
    ammonia
    estuary

    Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation

    Qin, W., Amin, S., Martens-Habbena, W., Walker, C. B., Urakawa, H., Devol, A. H., Ingalls, A. E., Moffett, J. W., Armbrust, E. V. & Stahl, D. A., Aug 26 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 34, p. 12504-12509 6 p.

    Research output: Contribution to journalArticle

    Ammonia
    Archaea
    Chemoautotrophic Growth
    Carbon
    Reactive Nitrogen Species
    2013

    Borate as a synergistic anion for marinobacter algicola ferric binding protein, FbpA: A role for boron in iron transport in marine life

    Weerasinghe, A. J., Amin, S., Barker, R. A., Othman, T., Romano, A. N., Parker Siburt, C. J., Tisnado, J., Lambert, L. A., Huxford, T., Carrano, C. J. & Crumbliss, A. L., Oct 2 2013, In : Journal of the American Chemical Society. 135, 39, p. 14504-14507 4 p.

    Research output: Contribution to journalArticle

    Marinobacter
    Borates
    Boron
    Anions
    Carrier Proteins

    Copper requirements of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1 and implications for nitrification in the marine environment

    Amin, S., Moffett, J. W., Martens-Habbena, W., Jacquot, J. E., Han, Y., Devol, A., Ingalls, A. E., Stahl, D. A. & Armbrust, E. V., Oct 30 2013, In : Limnology and Oceanography. 58, 6, p. 2037-2045 9 p.

    Research output: Contribution to journalArticle

    Archaea
    nitrification
    marine environment
    ammonia
    copper

    Detection of photoactive siderophore biosynthetic genes in the marine environment

    Gärdes, A., Triana, C., Amin, S., Green, D. H., Romano, A., Trimble, L. & Carrano, C. J., Jun 1 2013, In : BioMetals. 26, 3, p. 507-516 10 p.

    Research output: Contribution to journalArticle

    Siderophores
    siderophores
    marine environment
    Genes
    Ligands

    Regulation of iron transport related genes by boron in the marine bacterium Marinobacter algicola DG893

    Romano, A., Trimble, L., Hobusch, A. R., Schroeder, K. J., Amin, S., Hartnett, A. D., Barker, R. A., Crumbliss, A. L. & Carrano, C. J., Aug 1 2013, In : Metallomics. 5, 8, p. 1025-1030 6 p.

    Research output: Contribution to journalArticle

    Marinobacter
    Boron
    Bacteria
    Iron
    Genes
    2012

    Interactions between diatoms and bacteria

    Amin, S., Parker, M. S. & Armbrust, E. V., Sep 1 2012, In : Microbiology and Molecular Biology Reviews. 76, 3, p. 667-684 18 p.

    Research output: Contribution to journalReview article

    Microbial Interactions
    Diatoms
    Photosynthesis
    Oceans and Seas
    Signal Transduction

    Iron transport in the genus Marinobacter

    Amin, S., Green, D. H., Waheeb, D. A., Gärdes, A. & Carrano, C. J., Feb 1 2012, In : BioMetals. 25, 1, p. 135-147 13 p.

    Research output: Contribution to journalArticle

    Marinobacter
    Siderophores
    siderophores
    Iron
    iron

    Siderophore-mediated iron uptake in two clades of Marinobacter spp. associated with phytoplankton: The role of light

    Amin, S., Green, D. H., Gärdes, A., Romano, A., Trimble, L. & Carrano, C. J., Feb 1 2012, In : BioMetals. 25, 1, p. 181-192 12 p.

    Research output: Contribution to journalArticle

    Marinobacter
    Phytoplankton
    Siderophores
    siderophores
    Iron
    2009

    Boron and marine life: A new look at an enigmatic bioelement

    Carrano, C. J., Schellenberg, S., Amin, S., Green, D. H. & Küpper, F. C., Jul 1 2009, In : Marine Biotechnology. 11, 4, p. 431-440 10 p.

    Research output: Contribution to journalReview article

    Boron
    boron
    biogeochemistry
    Aquatic Organisms
    Nutritive Value

    Ferrie stability constants of representative marine siderophores: Marinobactins, aquachelins, and petrobactin

    Zhang, G., Amin, S., Küpper, F. C., Holt, P. D., Carrano, C. J. & Butler, A., Dec 1 2009, In : Inorganic Chemistry. 48, 23, p. 11466-11473 8 p.

    Research output: Contribution to journalArticle

    Siderophores
    Titration
    Nuclear magnetic resonance
    titration
    nuclear magnetic resonance

    Photolysis of iron-siderophore chelates promotes bacterial-algal mutualism

    Amin, S., Green, D. H., Hart, M. C., Küpper, F. C., Sunda, W. G. & Carrano, C. J., Oct 6 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 40, p. 17071-17076 6 p.

    Research output: Contribution to journalArticle

    Iron Chelating Agents
    Siderophores
    Symbiosis
    Photolysis
    Dinoflagellida

    Vibrioferrin, an unusual marine siderophore: Iron binding, photochemistry, and biological implications

    Amin, S., Green, D. H., Küpper, F. C. & Carrano, C. J., Dec 1 2009, In : Inorganic Chemistry. 48, 23, p. 11451-11458 8 p.

    Research output: Contribution to journalArticle

    Siderophores
    Photochemical reactions
    photochemical reactions
    Iron
    iron
    2007

    Borate binding to siderophores: Structure and stability

    Harris, W. R., Amin, S., Küpper, F. C., Green, D. H. & Carrano, C. J., Oct 10 2007, In : Journal of the American Chemical Society. 129, 40, p. 12263-12271 9 p.

    Research output: Contribution to journalArticle

    Siderophores
    Borates
    Boron
    Cell signaling
    Iron

    Boron binding by a siderophore isolated from marine bacteria associated with the toxic dinoflagellate Gymnodinium catenatum

    Amin, S., Küpper, F. C., Green, D. H., Harris, W. R. & Carrano, C. J., Jan 24 2007, In : Journal of the American Chemical Society. 129, 3, p. 478-479 2 p.

    Research output: Contribution to journalArticle

    Dinoflagellida
    Siderophores
    Boron
    Poisons
    Marinobacter