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Jonathan Flowers

Senior Research Scientist

    20012019

    Research output per year

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    Research Output

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    2019

    Cross-species hybridization and the origin of North African date palms

    Flowers, J., Hazzouri, K. M., Gros-Balthazard, M., Mo, Z., Koutroumpa, K., Perrakis, A., Ferrand, S., Khierallah, H. S. M., Fuller, D. Q., Aberlenc, F., Fournaraki, C. & Purugganan, M., Jan 29 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 5, p. 1651-1658 8 p.

    Research output: Contribution to journalArticle

    Genome-wide association mapping of date palm fruit traits

    Hazzouri, K. M., Gros-Balthazard, M., Flowers, J. M., Copetti, D., Lemansour, A., Lebrun, M., Masmoudi, K., Ferrand, S., Dhar, M. I., Fresquez, Z. A., Rosas, U., Zhang, J., Talag, J., Lee, S., Kudrna, D., Powell, R. F., Leitch, I. J., Krueger, R. R., Wing, R. A., Amiri, K. M. A. & 1 others, Purugganan, M. D., Dec 1 2019, In : Nature Communications. 10, 1, 4680.

    Research output: Contribution to journalArticle

    Open Access

    Origins and geographic diversification of African rice (Oryza glaberrima)

    Veltman, M. A., Flowers, J., van Andel, T. R. & Eric Schranz, M., Mar 1 2019, In : PLoS ONE. 14, 3, e0203508.

    Research output: Contribution to journalArticle

    Open Access
    2016

    Cryptic genetic variation for arabidopsis thaliana seed germination speed in a novel salt stress environment

    Yuan, W., Flowers, J., Sahraie, D. J. & Purugganan, M., 2016, In : G3: Genes, Genomes, Genetics. 6, 10, p. 3129-3138 10 p.

    Research output: Contribution to journalArticle

    Developing maps of fitness consequences for plant genomes

    Joly-Lopez, Z., Flowers, J. & Purugganan, M., Apr 1 2016, In : Current Opinion in Plant Biology. 30, p. 101-107 7 p.

    Research output: Contribution to journalArticle

    Domestication history and geographical adaptation inferred from a SNP map of African rice

    Meyer, R. S., Choi, J. Y., Sanches, M., Plessis, A., Flowers, J., Amas, J., Dorph, K., Barretto, A., Gross, B., Fuller, D. Q., Bimpong, I. K., Ndjiondjop, M. N., Hazzouri, K. M., Gregorio, G. B. & Purugganan, M., Aug 8 2016, (Accepted/In press) In : Nature Genetics.

    Research output: Contribution to journalArticle

    Extreme QTL mapping of germination speed in Arabidopsis thaliana

    Yuan, W., Flowers, J., Sahraie, D. J., Ehrenreich, I. M. & Purugganan, M., Sep 1 2016, In : Molecular Ecology. 25, 17, p. 4177-4196 20 p.

    Research output: Contribution to journalArticle

    2015

    Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

    Hazzouri, K. M., Flowers, J., Visser, H. J., Khierallah, H. S. M., Rosas, U., Pham, G. M., Meyer, R. S., Johansen, C. K., Fresquez, Z. A., Masmoudi, K., Haider, N., El Kadri, N., Idaghdhour, Y., Malek, J. A., Thirkhill, D., Markhand, G. S., Krueger, R. R., Zaid, A. & Purugganan, M., Nov 9 2015, In : Nature Communications. 6, 8824.

    Research output: Contribution to journalArticle

    Whole-genome resequencing reveals extensive natural variation in the model green alga chlamydomonas reinhardtii

    Flowers, J., Hazzouri, K. M., Pham, G. M., Rosas, U., Bahmani, T., Khraiwesh, B., Nelson, D., Jijakli, K., Abdrabu, R., Harris, E. H., Lefebvre, P. A., Hom, E. F. Y., Salehi-Ashtiani, K. & Purugganan, M., 2015, In : Plant Cell. 27, 9, p. 2353-2369 17 p.

    Research output: Contribution to journalArticle

    2014

    Possible loss of the chloroplast genome in the parasitic flowering plant Rafflesia lagascae (Rafflesiaceae)

    Molina, J., Hazzouri, K. M., Nickrent, D., Geisler, M., Meyer, R. S., Pentony, M. M., Flowers, J. M., Pelser, P., Barcelona, J., Inovejas, S. A., Uy, I., Yuan, W., Wilkins, O., Michel, C. I., Locklear, S., Concepcion, G. P. & Purugganan, M. D., Apr 1 2014, In : Molecular Biology and Evolution. 31, 4, p. 793-803 11 p.

    Research output: Contribution to journalArticle

    Variation in arabidopsis flowering time associated with cis-regulatory variation in CONSTANS

    Rosas, U., Mei, Y., Xie, Q., Banta, J. A., Zhou, R. W., Seufferheld, G., Gerard, S., Chou, L., Bhambhra, N., Parks, J. D., Flowers, J. M., McClung, C. R., Hanzawa, Y. & Purugganan, M. D., Apr 16 2014, In : Nature communications. 5, 3651.

    Research output: Contribution to journalArticle

    2013

    Molecular relationships between australian annual wild rice, Oryza meridionalis, and two related perennial forms

    Sotowa, M., Ootsuka, K., Kobayashi, Y., Hao, Y., Tanaka, K., Ichitani, K., Flowers, J. M., Purugganan, M. D., Nakamura, I., Sato, Y. I., Sato, T., Crayn, D., Simon, B., Waters, D. L. E., Henry, R. J. & Ishikawa, R., Jan 1 2013, In : Rice. 6, 26

    Research output: Contribution to journalArticle

    Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the drosophila retina

    Thanawala, S. U., Rister, J., Goldberg, G. W., Zuskov, A., Olesnicky, E. C., Flowers, J. M., Jukam, D., Purugganan, M. D., Gavis, E. R., Desplan, C. & Johnston, R. J., Apr 15 2013, In : Developmental Cell. 25, 1, p. 93-105 13 p.

    Research output: Contribution to journalArticle

    2012

    Diversifying selection underlies the origin of Allozyme polymorphism at the phosphoglucose isomerase locus in Tigriopus californicus

    Schoville, S. D., Flowers, J. M. & Burton, R. S., Jun 29 2012, In : PloS one. 7, 6, e40035.

    Research output: Contribution to journalArticle

    Natural selection in gene-dense regions shapes the genomic pattern of polymorphism in wild and domesticated rice

    Flowers, J. M., Molina, J., Rubinstein, S., Huang, P., Schaal, B. A. & Purugganan, M. D., Feb 1 2012, In : Molecular Biology and Evolution. 29, 2, p. 675-687 13 p.

    Research output: Contribution to journalArticle

    Phylogeography of Asian wild rice, Oryza rufipogon: A genome-wide view

    Huang, P., Molina, J., Flowers, J. M., Rubinstein, S., Jackson, S. A., Purugganan, M. D. & Schaal, B. A., Sep 1 2012, In : Molecular Ecology. 21, 18, p. 4593-4604 12 p.

    Research output: Contribution to journalArticle

    2011

    Molecular evidence for a single evolutionary origin of domesticated rice

    Molina, J., Sikora, M., Garud, N., Flowers, J. M., Rubinstein, S., Reynolds, A., Huang, P., Jackson, S., Schaal, B. A., Bustamante, C. D., Boyko, A. R. & Purugganan, M. D., May 17 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 20, p. 8351-8356 6 p.

    Research output: Contribution to journalArticle

    2010

    Migration, isolation and hybridization in island crop populations: The case of Madagascar rice

    Mather, K. A., Molina, J., Flowers, J. M., Rubinstein, S., Rauh, B. L., Lawton-Rauh, A., Caicedo, A. L., McNally, K. L. & Purugganan, M. D., Nov 24 2010, In : Molecular Ecology. 19, 22, p. 4892-4905 14 p.

    Research output: Contribution to journalArticle

    Variation, sex, and social cooperation: Molecular population genetics of the social amoeba Dictyostelium discoideum

    Flowers, J. M., Li, S. I., Stathos, A., Saxer, G., Ostrowski, E. A., Queller, D. C., Strassmann, J. E. & Purugganan, M. D., Jul 1 2010, In : PLoS genetics. 6, 7, p. 1-14 14 p.

    Research output: Contribution to journalArticle

    2009

    A population genomics study of the Arabidopsis core cell cycle genes shows the signature of natural selectionw

    Sterken, R., Kiekens, R., Coppens, E., Vercauteren, I., Zabeau, M., Lnzé, D., Flowers, J. & Vuylsteke, M., Oct 1 2009, In : Plant Cell. 21, 10, p. 2987-2998 12 p.

    Research output: Contribution to journalArticle

    Direct evidence that genetic variation in glycerol-3-phosphate and malate dehydrogenase genes (Gpdh and Mdh1) affects adult ethanol tolerance in Drosophila melanogaster

    Eanes, W. F., Merritt, T. J. S., Flowers, J. M., Kumagai, S. & Zhu, C. T., Feb 1 2009, In : Genetics. 181, 2, p. 607-614 8 p.

    Research output: Contribution to journalArticle

    Population genomics of the arabidopsis thaliana flowering time gene network

    Flowers, J. M., Hanzawa, Y., Hall, M. C., Moore, R. C. & Purugganan, M. D., Nov 1 2009, In : Molecular Biology and Evolution. 26, 11, p. 2475-2486 12 p.

    Research output: Contribution to journalArticle

    2008

    A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons

    Boualem, A., Fergany, M., Fernandez, R., Troadec, C., Martin, A., Morin, H., Sari, M. A., Collin, F., Flowers, J. M., Pitrat, M., Purugganan, M. D., Dogimont, C. & Bendahmane, A., Aug 8 2008, In : Science. 321, 5890, p. 836-838 3 p.

    Research output: Contribution to journalArticle

    2007

    Adaptive evolution of metabolic pathways in Drosophila

    Flowers, J. M., Sezgin, E., Kumagai, S., Duvernell, D. D., Matzkin, L. M., Schmidt, P. S. & Eanes, W. F., Jun 1 2007, In : Molecular Biology and Evolution. 24, 6, p. 1347-1354 8 p.

    Research output: Contribution to journalArticle

    2006

    Flux control and excess capacity in the enzymes of glycolysis and their relationship to flight metabolism in Drosophila melanogaster

    Eanes, W. F., Merritt, T. J. S., Flowers, J. M., Kumagai, S., Sezgin, E. & Zhu, C. T., Dec 19 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 51, p. 19413-19418 6 p.

    Research output: Contribution to journalArticle

    2005

    Unusual structure of ribosomal DNA in the copepod Tigriopus californicus: Intergenic spacer sequences lack internal subrepeats

    Burton, R. S., Metz, E. C., Flowers, J. M. & Willett, C. S., Jan 3 2005, In : Gene. 344, p. 105-113 9 p.

    Research output: Contribution to journalArticle

    2002

    The recruitment sweepstakes has many winners: Genetic evidence from the sea urchin Strongylocentrotus purpuratus

    Flowers, J. M., Schroeter, S. C. & Burton, R. S., Jan 1 2002, In : Evolution. 56, 7, p. 1445-1453 9 p.

    Research output: Contribution to journalArticle

    2001

    Reconciling molecular systematics and traditional taxonomy in a species-rich clade of sea stars (Leptasterias subgenus Hexasterias)

    Flowers, J. M. & Foltz, D. W., Jan 1 2001, In : Marine Biology. 139, 3, p. 475-483 9 p.

    Research output: Contribution to journalArticle