No photo of Glenn Butterfoss

Glenn Butterfoss

Senior Research Scientist

    19982019
    If you made any changes in Pure, your changes will be visible here soon.

    Research Output 1998 2019

    Filter
    Article
    2019

    Establishment of atropisomerism in 3-indolyl furanoids: A synthetic, experimental and theoretical perspective

    Chatterjee, S., Bhattacharjee, P., Butterfoss, G., Achari, A. & Jaisankar, P., Jan 1 2019, In : RSC Advances. 9, 39, p. 22384-22388 5 p.

    Research output: Contribution to journalArticle

    Open Access
    Circular dichroism spectroscopy
    Chirality
    Functional groups
    Proteins
    Kinetics
    2018

    An adaptive geometric search algorithm for macromolecular scaffold selection

    Jiang, T., Renfrew, P. D., Drew, K., Youngs, N., Butterfoss, G., Bonneau, R. & Shasha, D., Sep 1 2018, In : Protein engineering, design & selection : PEDS. 31, 9, p. 345-354 10 p.

    Research output: Contribution to journalArticle

    Open Access
    Scaffolds (biology)
    Scaffolds
    Proteins
    Peptidomimetics
    Catalytic Domain

    Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions

    Edison, J. R., Spencer, R. K., Butterfoss, G., Hudson, B. C., Hochbaum, A. I., Paravastu, A. K., Zuckermann, R. N. & Whitelam, S., May 29 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 22, p. 5647-5651 5 p.

    Research output: Contribution to journalArticle

    Peptoids
    Polymers
    Molecular Conformation
    Molecular Models
    Nanostructures

    Stabilizing Leaf and Branch Compost Cutinase (LCC) with Glycosylation: Mechanism and Effect on PET Hydrolysis

    Shirke, A. N., White, C., Englaender, J. A., Zwarycz, A., Butterfoss, G., Linhardt, R. J. & Gross, R. A., Feb 20 2018, In : Biochemistry. 57, 7, p. 1190-1200 11 p.

    Research output: Contribution to journalArticle

    Glycosylation
    Polyethylene Terephthalates
    Hydrolysis
    Soil
    Agglomeration
    2017

    Engineered Humicola insolens cutinase for efficient cellulose acetate deacetylation

    Shirke, A. N., Butterfoss, G., Saikia, R., Basu, A., de Maria, L., Svendsen, A. & Gross, R. A., Aug 1 2017, In : Biotechnology Journal. 12, 8, 1700188.

    Research output: Contribution to journalArticle

    Green Chemistry Technology
    Aspergillus oryzae
    Cellulases
    cutinase
    acetylcellulose

    The genome and phenome of the green alga chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization

    Nelson, D., Khraiwesh, B., Fu, W., Alseekh, S., Jaiswal, A., Chaiboonchoe, A., Hazzouri, K. M., O'Connor, M., Butterfoss, G., Drou, N., Rowe, J. D., Harb, J., Fernie, A. R., Gunsalus, K. & Salehi-Ashtiani, K., Jun 17 2017, In : eLife. 6, e25783.

    Research output: Contribution to journalArticle

    Chlorophyta
    Acclimatization
    Algae
    Genes
    Genome
    2016

    Comparative thermal inactivation analysis of Aspergillus oryzae and Thiellavia terrestris cutinase: Role of glycosylation

    Shirke, A. N., Su, A., Jones, J. A., Butterfoss, G., Koffas, M. A. G., Kim, J. & Gross, R. A., 2016, (Accepted/In press) In : Biotechnology and Bioengineering.

    Research output: Contribution to journalArticle

    Aspergillus oryzae
    Glycosylation
    Aspergillus
    Thermoanalysis
    Hot Temperature

    Influence of surface charge, binding site residues and glycosylation on Thielavia terrestris cutinase biochemical characteristics

    Shirke, A. N., Basore, D., Holton, S., Su, A., Baugh, E., Butterfoss, G., Makhatadze, G., Bystroff, C. & Gross, R. A., May 1 2016, In : Applied Microbiology and Biotechnology. 100, 10, p. 4435-4446 12 p.

    Research output: Contribution to journalArticle

    Glycosylation
    Binding Sites
    Esterases
    Polyesters
    Recycling

    Racemization barriers of atropisomeric 3,3′-bipyrroles: An experimental study with theoretical verification

    Chatterjee, S., Butterfoss, G., Mandal, M., Paul, B., Gupta, S., Bonneau, R. & Jaisankar, P., 2016, In : RSC Advances. 6, 75, p. 71245-71249 5 p.

    Research output: Contribution to journalArticle

    Carbon
    Circular dichroism spectroscopy
    Energy barriers
    Derivatives

    Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability

    Shirke, A. N., Basore, D., Butterfoss, G. L., Bonneau, R., Bystroff, C. & Gross, R. A., Jan 1 2016, In : Proteins: Structure, Function and Genetics. 84, 1, p. 60-72 13 p.

    Research output: Contribution to journalArticle

    Aspergillus oryzae
    Aspergillus
    Temperature
    Polyethylene Terephthalates
    Enzyme activity
    2015

    Peptoid nanosheets exhibit a new secondary-structure motif

    Mannige, R. V., Haxton, T. K., Proulx, C., Robertson, E. J., Battigelli, A., Butterfoss, G., Zuckermann, R. N. & Whitelam, S., Oct 15 2015, In : Nature. 526, 7573, p. 415-420 6 p.

    Research output: Contribution to journalArticle

    Peptoids
    Polymers
    Biomimetics
    Proteins
    Nanostructures
    2014

    A rotamer library to enable modeling and design of peptoid foldamers

    Renfrew, P. D., Craven, T. W., Butterfoss, G. L., Kirshenbaum, K. & Bonneau, R., Jun 18 2014, In : Journal of the American Chemical Society. 136, 24, p. 8772-8782 11 p.

    Research output: Contribution to journalArticle

    Peptoids
    Oligomers
    Mechanics
    Proteins
    N-substituted Glycines

    Conformational preferences of Peptide - Peptoid hybrid oligomers

    Butterfoss, G. L., Drew, K., Renfrew, P. D., Kirshenbaum, K. & Bonneau, R., Sep 1 2014, In : Biopolymers - Peptide Science Section. 102, 5, p. 369-378 10 p.

    Research output: Contribution to journalArticle

    Peptoids
    Oligomers
    Peptides
    Touch
    Proteins
    2013

    Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design

    Drew, K., Renfrew, P. D., Craven, T. W., Butterfoss, G. L., Chou, F. C., Lyskov, S., Bullock, B. N., Watkins, A., Labonte, J. W., Pacella, M., Kilambi, K. P., Leaver-Fay, A., Kuhlman, B., Gray, J. J., Bradley, P., Kirshenbaum, K., Arora, P. S., Das, R. & Bonneau, R., Jul 15 2013, In : PLoS One. 8, 7, e67051.

    Research output: Contribution to journalArticle

    Peptidomimetics
    Oligomers
    protein-protein interactions
    Proteins
    Peptides

    Enzyme-triggered hydrogelation via self-assembly of alternating peptides

    Qin, X., Xie, W., Tian, S., Cai, J., Yuan, H., Yu, Z., Butterfoss, G., Khuong, A. C. & Gross, R. A., May 25 2013, In : Chemical Communications. 49, 42, p. 4839-4841 3 p.

    Research output: Contribution to journalArticle

    Oligomerization
    Dipeptides
    Chymotrypsin
    Oligomers
    Self assembly
    2012

    De novo structure prediction and experimental characterization of folded peptoid oligomers

    Butterfoss, G. L., Yoo, B., Jaworski, J. N., Chorny, I., Dill, K. A., Zuckermann, R. N., Bonneau, R., Kirshenbaum, K. & Voelz, V. A., Sep 4 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 36, p. 14320-14325 6 p.

    Research output: Contribution to journalArticle

    Peptoids
    Molecular Dynamics Simulation
    Amides
    Biomimetics

    N-Naphthyl peptoid foldamers exhibiting atropisomerism

    Paul, B., Butterfoss, G. L., Boswell, M. G., Huang, M. L., Bonneau, R., Wolf, C. & Kirshenbaum, K., Feb 3 2012, In : Organic Letters. 14, 3, p. 926-929 4 p.

    Research output: Contribution to journalArticle

    Peptoids
    glycine
    oligomers
    chirality
    monomers
    2011

    Computational design of the sequence and structure of a protein-binding peptide

    Sammond, D. W., Bosch, D. E., Butterfoss, G., Purbeck, C., MacHius, M., Siderovski, D. P. & Kuhlman, B., Mar 30 2011, In : Journal of the American Chemical Society. 133, 12, p. 4190-4192 3 p.

    Research output: Contribution to journalArticle

    Protein Binding
    Peptides
    Conformations
    Crystal structure
    X-Rays

    Oligo(N-alkoxy glycines): trans substantiating peptoid conformations.

    Jordan, P. A., Paul, B., Butterfoss, G. L., Renfrew, P. D., Bonneau, R. & Kirshenbaum, K., 2011, In : Biopolymers - Peptide Science Section. 96, 5, p. 617-626 10 p.

    Research output: Contribution to journalArticle

    Peptoids
    Glycine
    Conformations
    Amino acids
    Oligomers

    Peptoid atropisomers

    Paul, B., Butterfoss, G. L., Boswell, M. G., Renfrew, P. D., Yeung, F. G., Shah, N. H., Wolf, C., Bonneau, R. & Kirshenbaum, K., Jul 20 2011, In : Journal of the American Chemical Society. 133, 28, p. 10910-10919 10 p.

    Research output: Contribution to journalArticle

    Peptoids
    Oligomers
    Chirality
    X ray crystallography
    X Ray Crystallography

    Rational design of temperature-sensitive alleles using computational structure prediction

    Poultney, C. S., Butterfoss, G. L., Gutwein, M. R., Drew, K., Gresham, D., Gunsalus, K. C., Shasha, D. E. & Bonneau, R., Sep 2 2011, In : PLoS One. 6, 9, e23947.

    Research output: Contribution to journalArticle

    Alleles
    alleles
    Temperature
    prediction
    mutation

    The Proteome Folding Project: Proteome-scale prediction of structure and function

    Drew, K., Winters, P., Butterfoss, G. L., Berstis, V., Uplinger, K., Armstrong, J., Riffle, M., Schweighofer, E., Bovermann, B., Goodlett, D. R., Davis, T. N., Shasha, D., Malmström, L. & Bonneau, R., Nov 2011, In : Genome Research. 21, 11, p. 1981-1994 14 p.

    Research output: Contribution to journalArticle

    Proteome
    Gene Ontology
    Human Genome
    Arabidopsis
    Diptera
    2010

    Computational Design of a PAK1 Binding Protein

    Jha, R. K., Leaver-Fay, A., Yin, S., Wu, Y., Butterfoss, G., Szyperski, T., Dokholyan, N. V. & Kuhlman, B., Jul 1 2010, In : Journal of Molecular Biology. 400, 2, p. 257-270 14 p.

    Research output: Contribution to journalArticle

    p21-Activated Kinases
    Spiders
    Carrier Proteins
    Proteins
    Molecular Probes

    Conformational dependence of 13C shielding and coupling constants for methionine methyl groups

    Butterfoss, G., Derose, E. F., Gabel, S. A., Perera, L., Krahn, J. M., Mueller, G. A., Zheng, X. & London, R. E., Sep 1 2010, In : Journal of Biomolecular NMR. 48, 1, p. 31-47 17 p.

    Research output: Contribution to journalArticle

    Methionine
    Shielding
    Dihedral angle
    Labeling
    Proteins

    Tryptophanyl-tRNA synthetase urzyme: A model to recapitulate molecular evolution and investigate intramolecular complementation

    Pham, Y., Kuhlman, B., Butterfoss, G., Hu, H., Weinreb, V. & Carter, C. W., Dec 3 2010, In : Journal of Biological Chemistry. 285, 49, p. 38590-38601 12 p.

    Research output: Contribution to journalArticle

    Tryptophan-tRNA Ligase
    Molecular Evolution
    Molecular Dynamics Simulation
    Amino Acids
    Adenosine Triphosphate
    2009

    A preliminary survey of the peptoid folding landscape

    Butterfoss, G. L., Renfrew, P. D., Kuhlman, B., Kirshenbaum, K. & Bonneau, R., 2009, In : Journal of the American Chemical Society. 131, 46, p. 16798-16807 10 p.

    Research output: Contribution to journalArticle

    Peptoids
    Conformations
    Dihedral angle
    Amides
    Oligomers

    Structural and functional studies of Aspergillus oryzae cutinase: Enhanced thermostability and hydrolytic activity of synthetic ester and polyester degradation

    Zhiqiang, L., Gosser, Y., Baker, P. J., Ravee, Y., Ziying, L., Alemu, G., Huiguang, L., Butterfoss, G., Kong, X. P., Gross, R. & Montclare, J., Nov 4 2009, In : Journal of the American Chemical Society. 131, 43, p. 15711-15716 6 p.

    Research output: Contribution to journalArticle

    Aspergillus oryzae
    Polyesters
    Aspergillus
    Esters
    Degradation
    2008

    Oligo(N-aryl glycines): A new twist on structured peptoids

    Shah, N. H., Butterfoss, G. L., Nguyen, K., Yoo, B., Bonneau, R., Rabenstein, D. L. & Kirshenbaum, K., Dec 10 2008, In : Journal of the American Chemical Society. 130, 49, p. 16622-16632 11 p.

    Research output: Contribution to journalArticle

    Peptoids
    Amides
    Glycine
    Amino acids
    Oligomers

    Using quantum mechanics to improve estimates of amino acid side chain rotamer energies

    Renfrew, P. D., Butterfoss, G. & Kuhlman, B., Jun 1 2008, In : Proteins: Structure, Function and Genetics. 71, 4, p. 1637-1646 10 p.

    Research output: Contribution to journalArticle

    Quantum theory
    Mechanics
    Protein Databases
    Amino Acids
    Dipeptides
    2007

    A Minimal TrpRS Catalytic Domain Supports Sense/Antisense Ancestry of Class I and II Aminoacyl-tRNA Synthetases

    Pham, Y., Li, L., Kim, A., Erdogan, O., Weinreb, V., Butterfoss, G., Kuhlman, B. & Carter, C. W., Mar 23 2007, In : Molecular Cell. 25, 6, p. 851-862 12 p.

    Research output: Contribution to journalArticle

    Amino Acyl-tRNA Synthetases
    Catalytic Domain
    Tryptophan-tRNA Ligase
    Aminoacylation
    Anticodon

    Maintaining solvent accessible surface area under rotamer substitution for protein design

    Leaver-Fay, A., Butterfoss, G., Snoeyink, J. & Kuhlman, B., Jun 1 2007, In : Journal of Computational Chemistry. 28, 8, p. 1336-1341 6 p.

    Research output: Contribution to journalArticle

    Surface area
    Substitution
    Substitution reactions
    Proteins
    Protein
    2005

    Protein imperfections: Separating intrinsic from extrinsic variation of torsion angles

    Butterfoss, G., Richardson, J. S. & Hermans, J., Jan 1 2005, In : Acta Crystallographica Section D: Biological Crystallography. 61, 1, p. 88-98 11 p.

    Research output: Contribution to journalArticle

    Proteins
    Databases
    Viverridae
    Torque
    Mechanics
    2003

    Boltzmann-type distribution of side-chain conformation in proteins

    Butterfoss, G. & Hermans, J., Dec 1 2003, In : Protein Science. 12, 12, p. 2719-2731 13 p.

    Research output: Contribution to journalArticle

    Protein Conformation
    Methionine
    Conformations
    Butyric Acid
    Mechanics
    2001

    Role of Enzyme-Ribofuranosyl contacts in the ground state and transition state for orotidine 5′-phosphate decarboxylase: A role for substrate destabilization?

    Miller, B. G., Butterfoss, G., Short, S. A. & Wolfenden, R., May 29 2001, In : Biochemistry. 40, 21, p. 6227-6232 6 p.

    Research output: Contribution to journalArticle

    Orotidine-5'-Phosphate Decarboxylase
    Electron transitions
    Ground state
    Substrates
    Enzymes
    1998

    Interfacial activation of triglyceride lipase from Thermomyces (Humicola) lanuginosa: Kinetic parameters and a basis for control of the lid

    Berg, O. G., Cajal, Y., Butterfoss, G., Grey, R. L., Alsina, M. A., Yu, B. Z. & Jain, M. K., May 12 1998, In : Biochemistry. 37, 19, p. 6615-6627 13 p.

    Research output: Contribution to journalArticle

    Lipase
    Kinetic parameters
    Hydrolysis
    Chemical activation
    Biochemistry