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Glenn Butterfoss

Senior Research Scientist

    19982019
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    Research Output

    2019

    Establishment of atropisomerism in 3-indolyl furanoids: A synthetic, experimental and theoretical perspective

    Chatterjee, S., Bhattacharjee, P., Butterfoss, G., Achari, A. & Jaisankar, P., Jan 1 2019, In : RSC Advances. 9, 39, p. 22384-22388 5 p.

    Research output: Contribution to journalArticle

    Open Access
    2018

    An adaptive geometric search algorithm for macromolecular scaffold selection

    Jiang, T., Renfrew, P. D., Drew, K., Youngs, N., Butterfoss, G., Bonneau, R. & Shasha, D., Sep 1 2018, In : Protein engineering, design & selection : PEDS. 31, 9, p. 345-354 10 p.

    Research output: Contribution to journalArticle

    Open Access

    Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions

    Edison, J. R., Spencer, R. K., Butterfoss, G., Hudson, B. C., Hochbaum, A. I., Paravastu, A. K., Zuckermann, R. N. & Whitelam, S., May 29 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 22, p. 5647-5651 5 p.

    Research output: Contribution to journalArticle

    Stabilizing Leaf and Branch Compost Cutinase (LCC) with Glycosylation: Mechanism and Effect on PET Hydrolysis

    Shirke, A. N., White, C., Englaender, J. A., Zwarycz, A., Butterfoss, G., Linhardt, R. J. & Gross, R. A., Feb 20 2018, In : Biochemistry. 57, 7, p. 1190-1200 11 p.

    Research output: Contribution to journalArticle

    2017

    Engineered Humicola insolens cutinase for efficient cellulose acetate deacetylation

    Shirke, A. N., Butterfoss, G., Saikia, R., Basu, A., de Maria, L., Svendsen, A. & Gross, R. A., Aug 1 2017, In : Biotechnology Journal. 12, 8, 1700188.

    Research output: Contribution to journalArticle

    The genome and phenome of the green alga chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization

    Nelson, D., Khraiwesh, B., Fu, W., Alseekh, S., Jaiswal, A., Chaiboonchoe, A., Hazzouri, K. M., O'Connor, M., Butterfoss, G., Drou, N., Rowe, J. D., Harb, J., Fernie, A. R., Gunsalus, K. & Salehi-Ashtiani, K., Jun 17 2017, In : eLife. 6, e25783.

    Research output: Contribution to journalArticle

    2016

    Comparative thermal inactivation analysis of Aspergillus oryzae and Thiellavia terrestris cutinase: Role of glycosylation

    Shirke, A. N., Su, A., Jones, J. A., Butterfoss, G., Koffas, M. A. G., Kim, J. & Gross, R. A., 2016, (Accepted/In press) In : Biotechnology and Bioengineering.

    Research output: Contribution to journalArticle

    Influence of surface charge, binding site residues and glycosylation on Thielavia terrestris cutinase biochemical characteristics

    Shirke, A. N., Basore, D., Holton, S., Su, A., Baugh, E., Butterfoss, G., Makhatadze, G., Bystroff, C. & Gross, R. A., May 1 2016, In : Applied Microbiology and Biotechnology. 100, 10, p. 4435-4446 12 p.

    Research output: Contribution to journalArticle

    Racemization barriers of atropisomeric 3,3′-bipyrroles: An experimental study with theoretical verification

    Chatterjee, S., Butterfoss, G., Mandal, M., Paul, B., Gupta, S., Bonneau, R. & Jaisankar, P., 2016, In : RSC Advances. 6, 75, p. 71245-71249 5 p.

    Research output: Contribution to journalArticle

    Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability

    Shirke, A. N., Basore, D., Butterfoss, G. L., Bonneau, R., Bystroff, C. & Gross, R. A., Jan 1 2016, In : Proteins: Structure, Function and Genetics. 84, 1, p. 60-72 13 p.

    Research output: Contribution to journalArticle

    2015

    Peptoid nanosheets exhibit a new secondary-structure motif

    Mannige, R. V., Haxton, T. K., Proulx, C., Robertson, E. J., Battigelli, A., Butterfoss, G., Zuckermann, R. N. & Whitelam, S., Oct 15 2015, In : Nature. 526, 7573, p. 415-420 6 p.

    Research output: Contribution to journalArticle

    2014

    A rotamer library to enable modeling and design of peptoid foldamers

    Renfrew, P. D., Craven, T. W., Butterfoss, G. L., Kirshenbaum, K. & Bonneau, R., Jun 18 2014, In : Journal of the American Chemical Society. 136, 24, p. 8772-8782 11 p.

    Research output: Contribution to journalArticle

    Conformational preferences of Peptide - Peptoid hybrid oligomers

    Butterfoss, G. L., Drew, K., Renfrew, P. D., Kirshenbaum, K. & Bonneau, R., Sep 1 2014, In : Biopolymers - Peptide Science Section. 102, 5, p. 369-378 10 p.

    Research output: Contribution to journalArticle

    2013

    Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design

    Drew, K., Renfrew, P. D., Craven, T. W., Butterfoss, G. L., Chou, F. C., Lyskov, S., Bullock, B. N., Watkins, A., Labonte, J. W., Pacella, M., Kilambi, K. P., Leaver-Fay, A., Kuhlman, B., Gray, J. J., Bradley, P., Kirshenbaum, K., Arora, P. S., Das, R. & Bonneau, R., Jul 15 2013, In : PLoS One. 8, 7, e67051.

    Research output: Contribution to journalArticle

    Enzyme-triggered hydrogelation via self-assembly of alternating peptides

    Qin, X., Xie, W., Tian, S., Cai, J., Yuan, H., Yu, Z., Butterfoss, G., Khuong, A. C. & Gross, R. A., May 25 2013, In : Chemical Communications. 49, 42, p. 4839-4841 3 p.

    Research output: Contribution to journalArticle

    2012

    De novo structure prediction and experimental characterization of folded peptoid oligomers

    Butterfoss, G. L., Yoo, B., Jaworski, J. N., Chorny, I., Dill, K. A., Zuckermann, R. N., Bonneau, R., Kirshenbaum, K. & Voelz, V. A., Sep 4 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 36, p. 14320-14325 6 p.

    Research output: Contribution to journalArticle

    N-Naphthyl peptoid foldamers exhibiting atropisomerism

    Paul, B., Butterfoss, G. L., Boswell, M. G., Huang, M. L., Bonneau, R., Wolf, C. & Kirshenbaum, K., Feb 3 2012, In : Organic Letters. 14, 3, p. 926-929 4 p.

    Research output: Contribution to journalArticle

    2011

    Computational design of the sequence and structure of a protein-binding peptide

    Sammond, D. W., Bosch, D. E., Butterfoss, G., Purbeck, C., MacHius, M., Siderovski, D. P. & Kuhlman, B., Mar 30 2011, In : Journal of the American Chemical Society. 133, 12, p. 4190-4192 3 p.

    Research output: Contribution to journalArticle

    Oligo(N-alkoxy glycines): trans substantiating peptoid conformations.

    Jordan, P. A., Paul, B., Butterfoss, G. L., Renfrew, P. D., Bonneau, R. & Kirshenbaum, K., 2011, In : Biopolymers - Peptide Science Section. 96, 5, p. 617-626 10 p.

    Research output: Contribution to journalArticle

    Peptoid atropisomers

    Paul, B., Butterfoss, G. L., Boswell, M. G., Renfrew, P. D., Yeung, F. G., Shah, N. H., Wolf, C., Bonneau, R. & Kirshenbaum, K., Jul 20 2011, In : Journal of the American Chemical Society. 133, 28, p. 10910-10919 10 p.

    Research output: Contribution to journalArticle

    Rational design of temperature-sensitive alleles using computational structure prediction

    Poultney, C. S., Butterfoss, G. L., Gutwein, M. R., Drew, K., Gresham, D., Gunsalus, K. C., Shasha, D. E. & Bonneau, R., Sep 2 2011, In : PLoS One. 6, 9, e23947.

    Research output: Contribution to journalArticle

    The Proteome Folding Project: Proteome-scale prediction of structure and function

    Drew, K., Winters, P., Butterfoss, G. L., Berstis, V., Uplinger, K., Armstrong, J., Riffle, M., Schweighofer, E., Bovermann, B., Goodlett, D. R., Davis, T. N., Shasha, D., Malmström, L. & Bonneau, R., Nov 2011, In : Genome Research. 21, 11, p. 1981-1994 14 p.

    Research output: Contribution to journalArticle

    2010

    Computational Design of a PAK1 Binding Protein

    Jha, R. K., Leaver-Fay, A., Yin, S., Wu, Y., Butterfoss, G., Szyperski, T., Dokholyan, N. V. & Kuhlman, B., Jul 1 2010, In : Journal of Molecular Biology. 400, 2, p. 257-270 14 p.

    Research output: Contribution to journalArticle

    Conformational dependence of 13C shielding and coupling constants for methionine methyl groups

    Butterfoss, G., Derose, E. F., Gabel, S. A., Perera, L., Krahn, J. M., Mueller, G. A., Zheng, X. & London, R. E., Sep 1 2010, In : Journal of Biomolecular NMR. 48, 1, p. 31-47 17 p.

    Research output: Contribution to journalArticle

    Tryptophanyl-tRNA synthetase urzyme: A model to recapitulate molecular evolution and investigate intramolecular complementation

    Pham, Y., Kuhlman, B., Butterfoss, G., Hu, H., Weinreb, V. & Carter, C. W., Dec 3 2010, In : Journal of Biological Chemistry. 285, 49, p. 38590-38601 12 p.

    Research output: Contribution to journalArticle

    2009

    A preliminary survey of the peptoid folding landscape

    Butterfoss, G. L., Renfrew, P. D., Kuhlman, B., Kirshenbaum, K. & Bonneau, R., 2009, In : Journal of the American Chemical Society. 131, 46, p. 16798-16807 10 p.

    Research output: Contribution to journalArticle

    Structural and functional studies of Aspergillus oryzae cutinase: Enhanced thermostability and hydrolytic activity of synthetic ester and polyester degradation

    Zhiqiang, L., Gosser, Y., Baker, P. J., Ravee, Y., Ziying, L., Alemu, G., Huiguang, L., Butterfoss, G., Kong, X. P., Gross, R. & Montclare, J., Nov 4 2009, In : Journal of the American Chemical Society. 131, 43, p. 15711-15716 6 p.

    Research output: Contribution to journalArticle

    2008

    Oligo(N-aryl glycines): A new twist on structured peptoids

    Shah, N. H., Butterfoss, G. L., Nguyen, K., Yoo, B., Bonneau, R., Rabenstein, D. L. & Kirshenbaum, K., Dec 10 2008, In : Journal of the American Chemical Society. 130, 49, p. 16622-16632 11 p.

    Research output: Contribution to journalArticle

    Using quantum mechanics to improve estimates of amino acid side chain rotamer energies

    Renfrew, P. D., Butterfoss, G. & Kuhlman, B., Jun 1 2008, In : Proteins: Structure, Function and Genetics. 71, 4, p. 1637-1646 10 p.

    Research output: Contribution to journalArticle

    2007

    A Minimal TrpRS Catalytic Domain Supports Sense/Antisense Ancestry of Class I and II Aminoacyl-tRNA Synthetases

    Pham, Y., Li, L., Kim, A., Erdogan, O., Weinreb, V., Butterfoss, G., Kuhlman, B. & Carter, C. W., Mar 23 2007, In : Molecular Cell. 25, 6, p. 851-862 12 p.

    Research output: Contribution to journalArticle

    Maintaining solvent accessible surface area under rotamer substitution for protein design

    Leaver-Fay, A., Butterfoss, G., Snoeyink, J. & Kuhlman, B., Jun 1 2007, In : Journal of Computational Chemistry. 28, 8, p. 1336-1341 6 p.

    Research output: Contribution to journalArticle

    2006

    Computer-based design of novel protein structures

    Butterfoss, G. & Kuhlman, B., Jun 19 2006, In : Annual Review of Biophysics and Biomolecular Structure. 35, p. 49-65 17 p.

    Research output: Contribution to journalReview article

    2005

    Protein imperfections: Separating intrinsic from extrinsic variation of torsion angles

    Butterfoss, G., Richardson, J. S. & Hermans, J., Jan 1 2005, In : Acta Crystallographica Section D: Biological Crystallography. 61, 1, p. 88-98 11 p.

    Research output: Contribution to journalArticle

    2003

    Boltzmann-type distribution of side-chain conformation in proteins

    Butterfoss, G. & Hermans, J., Dec 1 2003, In : Protein Science. 12, 12, p. 2719-2731 13 p.

    Research output: Contribution to journalArticle

    2001

    Role of Enzyme-Ribofuranosyl contacts in the ground state and transition state for orotidine 5′-phosphate decarboxylase: A role for substrate destabilization?

    Miller, B. G., Butterfoss, G., Short, S. A. & Wolfenden, R., May 29 2001, In : Biochemistry. 40, 21, p. 6227-6232 6 p.

    Research output: Contribution to journalArticle

    1998

    Interfacial activation of triglyceride lipase from Thermomyces (Humicola) lanuginosa: Kinetic parameters and a basis for control of the lid

    Berg, O. G., Cajal, Y., Butterfoss, G., Grey, R. L., Alsina, M. A., Yu, B. Z. & Jain, M. K., May 12 1998, In : Biochemistry. 37, 19, p. 6615-6627 13 p.

    Research output: Contribution to journalArticle