Faculty of Arts and Science

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2020

A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV

Johnson, J. S., De Veaux, N., Rives, A. W., Lahaye, X., Lucas, S. Y., Perot, B. P., Luka, M., Garcia-Paredes, V., Amon, L. M., Watters, A., Abdessalem, G., Aderem, A., Manel, N., Littman, D. R., Bonneau, R. & Ménager, M. M., Jan 21 2020, In : Cell Reports. 30, 3, p. 914-931.e9

Research output: Contribution to journalArticle

Open Access

A general equilibrium theory of banks' capital structure

Gale, D. & Gottardi, P., Mar 2020, In : Journal of Economic Theory. 186, 104995.

Research output: Contribution to journalArticle

A neural basis of probabilistic computation in visual cortex

Walker, E. Y., Cotton, R. J., Ma, W. J. & Tolias, A. S., Jan 1 2020, In : Nature Neuroscience. 23, 1, p. 122-129 8 p.

Research output: Contribution to journalArticle

Assessing the accuracy of existing forced alignment software on varieties of British English

Mackenzie, L. & Turton, D., Jan 1 2020, In : Linguistics Vanguard. 6, s1, 20180061.

Research output: Contribution to journalArticle

A Tournament Theory of Pork Barrel Politics: The Case of Japan

Catalinac, A., Bueno de Mesquita, B. & Smith, A., Jan 1 2020, (Accepted/In press) In : Comparative Political Studies.

Research output: Contribution to journalArticle

Better off and far away: Reactions to others’ outcomes depends on their distance

Yudkin, D. A., Liberman, N., Wakslak, C. & Trope, Y., Jan 2020, In : Organizational Behavior and Human Decision Processes. 156, p. 13-23 11 p.

Research output: Contribution to journalArticle

Cell-type-specific drug-inducible protein synthesis inhibition demonstrates that memory consolidation requires rapid neuronal translation

Shrestha, P., Ayata, P., Herrero-Vidal, P., Longo, F., Gastone, A., LeDoux, J. E., Heintz, N. & Klann, E., Feb 1 2020, In : Nature Neuroscience. 23, 2, p. 281-292 12 p.

Research output: Contribution to journalArticle

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

Gabitto, M. I., Rasmussen, A., Wapinski, O., Allaway, K., Carriero, N., Fishell, G. J. & Bonneau, R., Dec 1 2020, In : Nature communications. 11, 1, 747.

Research output: Contribution to journalArticle

Open Access

Cohort Increases In Sex With Same-Sex Partners: Do Trends Vary by Gender, Race, and Class?

Mishel, E., England, P., Ford, J. & Caudillo, M. L., Jan 1 2020, (Accepted/In press) In : Gender and Society.

Research output: Contribution to journalArticle

Constraints on contrast motivate nasal cluster dissimilation

Stanton, J., Jan 1 2020, In : Phonology. 36, 4, p. 655-694 40 p.

Research output: Contribution to journalArticle

Contingent adaptation in masking and surround suppression

Yiltiz, H., Heeger, D. J. & Landy, M. S., Jan 2020, In : Vision Research. 166, p. 72-80 9 p.

Research output: Contribution to journalArticle

Open Access

Economic system justification predicts muted emotional responses to inequality

Goudarzi, S., Pliskin, R., Jost, J. T. & Knowles, E. D., Dec 1 2020, In : Nature communications. 11, 1, 383.

Research output: Contribution to journalArticle

Open Access

Energy balance but not competitive environment corresponds with allostatic load during development in an Old World monkey

Thompson, N. A., Higham, J. P., Heistermann, M., Vogel, E. & Cords, M., Mar 2020, In : Hormones and Behavior. 119, 104664.

Research output: Contribution to journalArticle

Gene regulatory network reconstruction using single-cell rna sequencing of barcoded genotypes in diverse environments

Jackson, C. A., Castro, D. M., Saldi, G. A., Bonneau, R. & Gresham, D., Jan 2020, In : eLife. 9, e51254.

Research output: Contribution to journalArticle

Open Access

Government formation as logrolling in high-dimensional issue spaces

de Marchi, S. & Laver, M., Jan 1 2020, (Accepted/In press) In : Journal of Politics.

Research output: Contribution to journalArticle

Identification of novel RNA design candidates by clustering the extended RNA-As-Graphs library

Jain, S., Zhu, Q., Paz, A. S. P. & Schlick, T., Jun 2020, In : Biochimica et Biophysica Acta - General Subjects. 1864, 6, 129534.

Research output: Contribution to journalArticle

Inverse folding with RNA-As-Graphs produces a large pool of candidate sequences with target topologies

Jain, S., Tao, Y. & Schlick, T., Jan 1 2020, (Accepted/In press) In : Journal of Structural Biology. 107438.

Research output: Contribution to journalArticle

Look before you fit: The real-time planning cascade in children and adults

Ossmy, O., Han, D., Cheng, M., Kaplan, B. E. & Adolph, K. E., Jan 2020, In : Journal of Experimental Child Psychology. 189, 104696.

Research output: Contribution to journalArticle

Male characteristics as predictors of genital color and display variation in vervet monkeys

Young, M. M. I., Winters, S., Young, C., Weiß, B. M., Troscianko, J., Ganswindt, A., Barrett, L., Henzi, S. P., Higham, J. P. & Widdig, A., Feb 1 2020, In : Behavioral Ecology and Sociobiology. 74, 2, 14.

Research output: Contribution to journalArticle

Open Access

Necessary and Sufficient Conditions for Existence and Uniqueness of Recursive Utilities

Borovička, J. & Stachurski, J., Jan 1 2020, (Accepted/In press) In : Journal of Finance.

Research output: Contribution to journalArticle

Negative campaigns, interpersonal trust, and prosocial behavior: The mediating effect of democratic experience

Haas, N., Hassan, M. & Morton, R., Feb 2020, In : Electoral Studies. 63, 102087.

Research output: Contribution to journalArticle

Optical control of the nuclear bile acid receptor FXR with a photohormone

Morstein, J., Trads, J. B., Hinnah, K., Willems, S., Barber, D. M., Trauner, M., Merk, D. & Trauner, D., Jan 1 2020, In : Chemical Science. 11, 2, p. 429-434 6 p.

Research output: Contribution to journalArticle

Open Access

PHOTACs enable optical control of protein degradation

Reynders, M., Matsuura, B. S., Bérouti, M., Simoneschi, D., Marzio, A., Pagano, M. & Trauner, D., Jan 1 2020, In : Science Advances. 6, 8, eaay5064.

Research output: Contribution to journalArticle

Open Access

RAG-Web: RNA structure prediction/design using RNA-As-Graphs

Meng, G., Tariq, M., Jain, S., Elmetwaly, S. & Schlick, T., Jan 15 2020, In : Bioinformatics (Oxford, England). 36, 2, p. 647-648 2 p.

Research output: Contribution to journalArticle

SDG8-Mediated Histone Methylation and RNA Processing Function in the Response to Nitrate Signaling

Li, Y., Brooks, M., Yeoh-Wang, J., McCoy, R. M., Rock, T. M., Pasquino, A., Moon, C. I., Patrick, R. M., Tanurdzic, M., Ruffel, S., Widhalm, J. R., McCombie, W. R. & Coruzzi, G. M., Jan 1 2020, In : Plant physiology. 182, 1, p. 215-227 13 p.

Research output: Contribution to journalArticle

Open Access

Suppression of MEHMO Syndrome Mutation in eIF2 by Small Molecule ISRIB

Young-Baird, S. K., Lourenço, M. B., Elder, M. K., Klann, E., Liebau, S. & Dever, T. E., Feb 20 2020, In : Molecular Cell. 77, 4, p. 875-886.e7

Research output: Contribution to journalArticle

Teachers’ belief that math requires innate ability predicts lower intrinsic motivation among low-achieving students

Heyder, A., Weidinger, A. F., Cimpian, A. & Steinmayr, R., Feb 1 2020, In : Learning and Instruction. 65, 101220.

Research output: Contribution to journalArticle

The role of developmental change and linguistic experience in the mutual exclusivity effect

Lewis, M., Cristiano, V., Lake, B. M., Kwan, T. & Frank, M. C., May 2020, In : Cognition. 198, 104191.

Research output: Contribution to journalArticle

The structure of species discrimination signals across a primate radiation

Winters, S., Allen, W. L. & Higham, J. P., Jan 13 2020, In : eLife. 9

Research output: Contribution to journalArticle

Open Access

Trait knowledge forms a common structure across social cognition

Stolier, R. M., Hehman, E. & Freeman, J. B., Jan 1 2020, (Accepted/In press) In : Nature Human Behaviour.

Research output: Contribution to journalArticle

Tuning the optical isotropic point of mixed crystals of ethylenediammonium sulfate/selenate Tuning the optical isotropic point of mixed crystals

Tan, M., Martin, A. T., Shtukenberg, A. G. & Kahr, B., Feb 1 2020, In : Journal of Applied Crystallography. 53, p. 51-57 7 p.

Research output: Contribution to journalArticle

Twisted probabilities, uncertainty, and prices

Hansen, L. P., Szőke, B., Han, L. S. & Sargent, T. J., Jan 1 2020, (Accepted/In press) In : Journal of Econometrics.

Research output: Contribution to journalArticle

Open Access

Variation in mouse pelvic morphology maps to locations enriched in Sox9 Class II and Pitx1 regulatory features

Roseman, C. C., Capellini, T. D., Jagoda, E., Williams, S. A., Grabowski, M., O'Connor, C., Polk, J. D. & Cheverud, J. M., Mar 1 2020, In : Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 334, 2, p. 100-112 13 p.

Research output: Contribution to journalArticle

“Where You Lead, I Will Follow”: Partisan Cueing on High-Salience Issues in a Turbulent Multiparty System

Brader, T., De Sio, L., Paparo, A. & Tucker, J. A., Jan 1 2020, (Accepted/In press) In : Political Psychology.

Research output: Contribution to journalArticle

2019

1 H-decoupling and Isotopic Labeling for the Measurement of the Longitudinal Relaxation Time of Hyperpolarized 13 C-Methylenes in Choline Analogs

Uppala, S., Gamliel, A., Harris, T., Sosna, J., Gomori, J. M., Jerschow, A. & Katz-Brull, R., Jan 1 2019, In : Israel Journal of Chemistry.

Research output: Contribution to journalArticle

5-Formylcytosine-induced DNA–peptide cross-links reduce transcription efficiency, but do not cause transcription errors in human cells

Ji, S., Park, D., Kropachev, K., Kolbanovskiy, M., Fu, I., Broyde, S., Essawy, M., Geacintov, N. E. & Tretyakova, N. Y., Jan 1 2019, In : Journal of Biological Chemistry. 294, 48, p. 18387-18397 11 p.

Research output: Contribution to journalArticle

Ab Initio Molecular Dynamics Study of Hydroxide Diffusion Mechanisms in Nanoconfined Structural Mimics of Anion Exchange Membranes

Zelovich, T., Long, Z., Hickner, M., Paddison, S. J., Bae, C. & Tuckerman, M., Feb 28 2019, In : Journal of Physical Chemistry C. 123, 8, p. 4638-4653 16 p.

Research output: Contribution to journalArticle

A Biomimetic Synthesis Elucidates the Origin of Preuisolactone A

Novak, A. J. E., Grigglestone, C. E. & Trauner, D., Jan 1 2019, (Accepted/In press) In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

A brainstem-central amygdala circuit underlies defensive responses to learned threats

Gu, Y., Piper, W. T., Branigan, L. A., Vazey, E. M., Aston-Jones, G., Lin, L., LeDoux, J. E. & Sears, R. M., Jan 1 2019, (Accepted/In press) In : Molecular Psychiatry.

Research output: Contribution to journalArticle

Open Access

A case study in the functional consequences of scaling the sizes of realistic cortical models

Joglekar, M. R., Chariker, L., Shapley, R. & Young, L-S., Jul 1 2019, In : PLoS computational biology. 15, 7, e1007198.

Research output: Contribution to journalArticle

Open Access

Accelerated Molecular Dynamics Simulation for Helical Proteins Folding in Explicit Water

Duan, L., Guo, X., Cong, Y., Feng, G., Li, Y. & Zhang, J., Aug 6 2019, In : Frontiers in Chemistry. 7, 540.

Research output: Contribution to journalArticle

Open Access

A comparison of the prevalence of psychiatric disorders in Puerto Rico with the United States and the Puerto Rican population of the United States

Canino, G., Shrout, P., NeMoyer, A., Vila, D., Santiago, K. M., Garcia, P., Quiñones, A., Cruz, V. & Alegria, M., Jan 1 2019, (Accepted/In press) In : Social Psychiatry and Psychiatric Epidemiology.

Research output: Contribution to journalArticle

A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory

Athanasiadou, R., Neymotin, B., Brandt, N., Wang, W., Christiaen, L., Gresham, D. & Tranchina, D., Mar 1 2019, In : PLoS computational biology. 15, 3, p. e1006794

Research output: Contribution to journalArticle

Open Access

A Conserved Allosteric Pathway in Tyrosine Kinase Regulation

Marsiglia, W. M., Katigbak, J., Zheng, S., Mohammadi, M., Zhang, Y. & Traaseth, N. J., Aug 6 2019, In : Structure. 27, 8, p. 1308-1315.e3

Research output: Contribution to journalArticle

A conserved regulatory program initiates lateral plate mesoderm emergence across chordates

Prummel, K. D., Hess, C., Nieuwenhuize, S., Parker, H. J., Rogers, K. W., Kozmikova, I., Racioppi, C., Brombacher, E. C., Czarkwiani, A., Knapp, D., Burger, S., Chiavacci, E., Shah, G., Burger, A., Huisken, J., Yun, M. H., Christiaen, L., Kozmik, Z., Müller, P., Bronner, M. & 2 others, Krumlauf, R. & Mosimann, C., Dec 1 2019, In : Nature Communications. 10, 1, 3857.

Research output: Contribution to journalArticle

Open Access