Research Output

Filter
Article
2013

A Game Mechanics Approach to Learning and Assessment in Games for Learning

Homer, B. D., Plass, J., Kinzer, C. K. & Perlin, K., 2013, Advanced Distributed Learning Newsletter.

Research output: Contribution to specialist publicationArticle

A genome-wide RNA interference screen identifies new regulators of androgen receptor function in prostate cancer cells

Imberg-Kazdan, K., Ha, S., Greenfield, A., Poultney, C. S., Bonneau, R., Logan, S. K. & Garabedian, M. J., Apr 1 2013, In : Genome Research. 23, 4, p. 581-591 11 p.

Research output: Contribution to journalArticle

A grand unified theory of everything

Marcus, G. & Davis, E., May 6 2013, New Yorker (on-line edition).

Research output: Contribution to specialist publicationArticle

Animation-aware quadrangulation

Marcias, G., Pietroni, N., Panozzo, D., Puppo, E. & Sorkine-Hornung, O., Aug 2013, In : Computer Graphics Forum. 32, 5, p. 167-175 9 p.

Research output: Contribution to journalArticle

A note on discrete gaussian combinations of lattice vectors

Aggarwal, D. & Regev, O., Aug 11 2013, In : arXiv. 1308.2405.

Research output: Contribution to journalArticle

A physical sciences network characterization of non-tumorigenic and metastatic cells

Agus, D. B., Alexander, J. F., Arap, W., Ashili, S., Aslan, J. E., Austin, R. H., Backman, V., Bethel, K. J., Bonneau, R., Chen, W. C., Chen-Tanyolac, C., Choi, N. C., Curley, S. A., Dallas, M., Damania, D., Davies, P. C. W., Decuzzi, P., Dickinson, L., Estevez-Salmeron, L., Estrella, V. & 75 others, Ferrari, M., Fischbach, C., Foo, J., Fraley, S. I., Frantz, C., Fuhrmann, A., Gascard, P., Gatenby, R. A., Geng, Y., Gerecht, S., Gillies, R. J., Godin, B., Grady, W. M., Greenfield, A., Hemphill, C., Hempstead, B. L., Hielscher, A., Hillis, W. D., Holland, E. C., Ibrahim-Hashim, A., Jacks, T., Johnson, R. H., Joo, A., Katz, J. E., Kelbauskas, L., Kesselman, C., King, M. R., Konstantopoulos, K., Kraning-Rush, C. M., Kuhn, P., Kung, K., Kwee, B., Lakins, J. N., Lambert, G., Liao, D., Licht, J. D., Liphardt, J. T., Liu, L., Lloyd, M. C., Lyubimova, A., Mallick, P., Marko, J., McCarty, O. J. T., Meldrum, D. R., Michor, F., Mumenthaler, S. M., Nandakumar, V., O'Halloran, T. V., Oh, S., Pasqualini, R., Paszek, M. J., Philips, K. G., Poultney, C. S., Rana, K., Reinhart-King, C. A., Ros, R., Semenza, G. L., Senechal, P., Shuler, M. L., Srinivasan, S., Staunton, J. R., Stypula, Y., Subramanian, H., Tlsty, T. D., Tormoen, G. W., Tseng, Y., Van Oudenaarden, A., Verbridge, S. S., Wan, J. C., Weaver, V. M., Widom, J., Will, C., Wirtz, D., Wojtkowiak, J. & Wu, P. H., Jul 4 2013, In : Scientific reports. 3, 1449.

Research output: Contribution to journalArticle

A subgraph isomorphism algorithm and its application to biochemical data

Bonnici, V., Giugno, R., Pulvirenti, A., Shasha, D. & Ferro, A., Apr 22 2013, In : BMC bioinformatics. 14, SUPPL7, S13.

Research output: Contribution to journalArticle

Being careful about theory combination

Jovanović, D. & Barrett, C., Feb 1 2013, In : Formal Methods in System Design. 42, 1, p. 67-90 24 p.

Research output: Contribution to journalArticle

Broadband millimeter-wave propagation measurements and models using adaptive-beam antennas for outdoor Urban cellular communications

Rappaport, T. S., Gutierrez, F., Ben-Dor, E., Murdock, J. N., Qiao, Y. & Tamir, J. I., Jan 1 2013, In : IEEE Transactions on Antennas and Propagation. 61, 4, p. 1850-1859 10 p., 6387266.

Research output: Contribution to journalArticle

Chemoselective fragment condensation between peptide and peptidomimetic oligomers

Levine, P. M., Craven, T. W., Bonneau, R. & Kirshenbaum, K., Jul 7 2013, In : Organic and Biomolecular Chemistry. 11, 25, p. 4142-4146 5 p.

Research output: Contribution to journalArticle

Complete instantiation-based interpolation

Totla, N. & Wies, T., Jan 1 2013, In : ACM SIGPLAN Notices. 48, 1, p. 537-548 12 p.

Research output: Contribution to journalArticle

Consistent volumetric discretizations inside self-intersecting surfaces

Sacht, L., Jacobson, A., Panozzo, D., Schüller, C. & Sorkine-Hornung, O., Aug 2013, In : Computer Graphics Forum. 32, 5, p. 147-156 10 p.

Research output: Contribution to journalArticle

Controlled-distortion constrained global parametrization

Myles, A. & Zorin, D., 2013, In : ACM Transactions on Graphics. 32, 4, p. 105

Research output: Contribution to journalArticle

Decision procedures: An algorithmic point of view, by Daniel Kroening and Ofer Strichman, Springer-Verlag, 2008

Barrett, C., Dec 1 2013, In : Journal of Automated Reasoning. 51, 4, p. 453-456 4 p.

Research output: Contribution to journalArticle

Designing unreinforced masonry models

Panozzo, D., Block, P. & Sorkine-Hornung, O., Jul 1 2013, In : ACM Transactions on Graphics. 32, 4, 91.

Research output: Contribution to journalArticle

Detecting friendly, flirtatious, awkward, and assertive speech in speed-dates

Ranganath, R., Jurafsky, D. & McFarland, D. A., Jan 1 2013, In : Computer Speech and Language. 27, 1, p. 89-115 27 p.

Research output: Contribution to journalArticle

Deterministic discrepancy minimization

Bansal, N. & Spencer, J., Jan 1 2013, In : Algorithmica. 67, 4, p. 451-471 21 p.

Research output: Contribution to journalArticle

DevStaR: High-throughput quantification of C. elegans developmental stages

White, A. G., Lees, B., Kao, H. L., Cipriani, P. G., Munarriz, E., Paaby, A. B., Erickson, K., Guzman, S., Rattanakorn, K., Sontag, E., Geiger, D., Gunsalus, K. C. & Piano, F., Oct 14 2013, In : IEEE Transactions on Medical Imaging. 32, 10, p. 1791-1803 13 p., 6521338.

Research output: Contribution to journalArticle

Elementarily equivalent structures for topological languages over regions in Euclidean space

Davis, E., Jun 1 2013, In : Journal of Logic and Computation. 23, 3, p. 457-471 15 p.

Research output: Contribution to journalArticle

Entropy-based bounds on dimension reduction in L1

Regev, O., Jun 1 2013, In : Israel Journal of Mathematics. 195, 2, p. 825-832 8 p.

Research output: Contribution to journalArticle

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27

Kilambi, K. P., Pacella, M. S., Xu, J., Labonte, J. W., Porter, J. R., Muthu, P., Drew, K., Kuroda, D., Schueler-Furman, O., Bonneau, R. & Gray, J. J., Dec 1 2013, In : Proteins: Structure, Function and Bioinformatics. 81, 12, p. 2201-2209 9 p.

Research output: Contribution to journalArticle

Fast approximation of the H norm via optimization over spectral value sets

Guglielmi, N., Gürbüzbalaban, M. & Overton, M. L., Jul 29 2013, In : SIAM Journal on Matrix Analysis and Applications. 34, 2, p. 709-737 29 p.

Research output: Contribution to journalArticle

Fast Generalized Subset Scan for anomalous pattern detection

McFowland, E., Speakman, S. & Neill, D. B., Jun 1 2013, In : Journal of Machine Learning Research. 14, p. 1533-1561 29 p.

Research output: Contribution to journalArticle

Fast subset scan for multivariate event detection

Neill, D. B., Mcfowland, E. & Zheng, H., Jun 15 2013, In : Statistics in Medicine. 32, 13, p. 2185-2208 24 p.

Research output: Contribution to journalArticle

Feature learning and deep architectures: New directions for music informatics

Humphrey, E. J., Bello, J. P. & Lecun, Y., Dec 1 2013, In : Journal of Intelligent Information Systems. 41, 3, p. 461-481 21 p.

Research output: Contribution to journalArticle

Gene regulatory networks in plants: Learning causality from time and perturbation

Krouk, G., Lingeman, J., Colon, A. M., Coruzzi, G. & Shasha, D., Jun 27 2013, In : Genome biology. 14, 6, 123.

Research output: Contribution to journalArticle

GRAPES: A Software for Parallel Searching on Biological Graphs Targeting Multi-Core Architectures

Giugno, R., Bonnici, V., Bombieri, N., Pulvirenti, A., Ferro, A. & Shasha, D., Oct 22 2013, In : PloS one. 8, 10, e76911.

Research output: Contribution to journalArticle

How Robust Are Probabilistic Models of Higher-Level Cognition?

Marcus, G. F. & Davis, E., Dec 2013, In : Psychological Science. 24, 12, p. 2351-2360 10 p.

Research output: Contribution to journalArticle

Invariant scattering convolution networks

Bruna, J. & Mallat, S., Jul 12 2013, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 35, 8, p. 1872-1886 15 p., 6522407.

Research output: Contribution to journalArticle

Large-scale SVD and manifold learning

Talwalkar, A., Kumar, S., Mohri, M. & Rowley, H., Oct 1 2013, In : Journal of Machine Learning Research. 14, p. 3129-3152 24 p.

Research output: Contribution to journalArticle

Learning hierarchical features for scene labeling

Farabet, C., Couprie, C., Najman, L. & Lecun, Y., Jul 12 2013, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 35, 8, p. 1915-1929 15 p., 6338939.

Research output: Contribution to journalArticle

Locally injective mappings

Schüller, C., Kavan, L., Panozzo, D. & Sorkine-Hornung, O., Aug 2013, In : Computer Graphics Forum. 32, 5, p. 125-135 11 p.

Research output: Contribution to journalArticle

Maths is the true language of science

Marcus, G. & Davis, E., Apr 13 2013, Financial Times.

Research output: Contribution to specialist publicationArticle

Millimeter wave mobile communications for 5G cellular: It will work!

Rappaport, T. S., Sun, S., Mayzus, R., Zhao, H., Azar, Y., Wang, K., Wong, G. N., Schulz, J. K., Samimi, M. & Gutierrez, F., 2013, In : IEEE Access. 1, p. 335-349 15 p., 6515173.

Research output: Contribution to journalArticle

Molecular network analysis of phosphotyrosine and lipid metabolism in hepatic PTP1b deletion mice

Miraldi, E. R., Sharfi, H., Friedline, R. H., Johnson, H., Zhang, T., Lau, K. S., Ko, H. J., Curran, T. G., Haigis, K. M., Yaffe, M. B., Bonneau, R., Lauffenburger, D. A., Kahn, B. B., Kim, J. K., Neel, B. G., Saghatelian, A. & White, F. M., Jul 15 2013, In : Integrative Biology (United Kingdom). 5, 7, p. 940-963 24 p.

Research output: Contribution to journalArticle

Non-local isotopic approximation of nonsingular surfaces

Lin, L., Yap, C. & Yu, J., Feb 1 2013, In : CAD Computer Aided Design. 45, 2, p. 451-462 12 p.

Research output: Contribution to journalArticle

Nonsmooth optimization via quasi-Newton methods

Lewis, A. S. & Overton, M. L., Oct 1 2013, In : Mathematical Programming. 141, 1-2, p. 135-163 29 p.

Research output: Contribution to journalArticle

NP-Hardness of approximately solving linear equations over reals

Khot, S. & Moshkovitz, D., Aug 30 2013, In : SIAM Journal on Computing. 42, 3, p. 752-791 40 p.

Research output: Contribution to journalArticle

On Ideal lattices and learning with errors over rings

Lyubashevsky, V., Peikert, C. & Regev, O., Nov 1 2013, In : Journal of the ACM. 60, 6, 43.

Research output: Contribution to journalArticle

On the disambiguation of finite automata and functional transducers

Mohri, M., Sep 1 2013, In : International Journal of Foundations of Computer Science. 24, 6, p. 847-862 16 p.

Research output: Contribution to journalArticle

Parametric Bayesian priors and better choice of negative examples improve protein function prediction.

Youngs, N., Penfold-Brown, D., Drew, K., Shasha, D. & Bonneau, R., May 1 2013, In : Unknown Journal. 29, 9, p. 1190-1198 9 p.

Research output: Contribution to journalArticle

Practical chosen ciphertext secure encryption from factoring

Hofheinz, D., Kiltz, E. & Shoup, V., Jan 1 2013, In : Journal of Cryptology. 26, 1, p. 102-118 17 p.

Research output: Contribution to journalArticle

Qualitative Spatial Reasoning in Interpreting Text and Narrative

Davis, E., Oct 1 2013, In : Spatial Cognition and Computation. 13, 4, p. 264-294 31 p.

Research output: Contribution to journalArticle

Reconnaissance of the hr 8799 exosolar system. I. near-infrared spectroscopy

Roberts, L. C., Oppenheimer, B. R., Baranec, C., Beichman, C., Brenner, D., Burruss, R., Cady, E., Crepp, J. R., Dekany, R., Fergus, R., Hale, D., Hillenbrand, L., Hinkley, S., Hogg, D. W., King, D., Ligon, E. R., Lockhart, T., Nilsson, R., Parry, I. R., Pueyo, L. & 13 others, Rice, E., Roberts, J. E., Roberts, L. C., Shao, M., Sivaramakrishnan, A., Soummer, R., Truong, T., Vasisht, G., Veicht, A., Vescelus, F., Wallace, J. K., Zhai, C. & Zimmerman, N., May 1 2013, In : Astrophysical Journal. 768, 1, 24.

Research output: Contribution to journalArticle

Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks

Greenfield, A., Hafemeister, C. & Bonneau, R., Apr 15 2013, In : Bioinformatics. 29, 8, p. 1060-1067 8 p.

Research output: Contribution to journalArticle

Robust stability at the swallowtail singularity

Overton, M. & Kirillov, O., 2013, In : Frontiers in Mathematical Physics. 1, Article 24, DOI: 10.3389/fphy.2013.00024.

Research output: Contribution to journalArticle

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

Lyskov, S., Chou, F. C., Conchúir, S. Ó., Der, B. S., Drew, K., Kuroda, D., Xu, J., Weitzner, B. D., Renfrew, P. D., Sripakdeevong, P., Borgo, B., Havranek, J. J., Kuhlman, B., Kortemme, T., Bonneau, R., Gray, J. J. & Das, R., May 22 2013, In : PloS one. 8, 5, e63906.

Research output: Contribution to journalArticle

Sharp kernel clustering algorithms and their associated Grothendieck inequalities

Khot, S. & Naor, A., May 1 2013, In : Random Structures and Algorithms. 42, 3, p. 269-300 32 p.

Research output: Contribution to journalArticle

Sketch-based generation and editing of quad meshes

Takayama, K., Panozzo, D., Sorkine-Hornung, O. & Sorkine-Hornung, A., Jul 1 2013, In : ACM Transactions on Graphics. 32, 4, 97.

Research output: Contribution to journalArticle