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2014

Hardness of approximation for quantum problems

Gharibian, S. & Kempe, J., Apr 1 2014, In : Quantum Information and Computation. 14, 5-6, p. 517-540 24 p.

Research output: Contribution to journalArticle

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota

Lee, S. C., Tang, M. S., Lim, Y. A. L., Choy, S. H., Kurtz, Z. D., Cox, L. M., Gundra, U. M., Cho, I., Bonneau, R., Blaser, M. J., Chua, K. H. & Loke, P., May 2014, In : PLoS neglected tropical diseases. 8, 5, e2880.

Research output: Contribution to journalArticle

ICOS-based chimeric antigen receptors program bipolar TH17/ TH1 cells

Guedan, S., Chen, X., Madar, A., Carpenito, C., McGettigan, S. E., Frigault, M. J., Lee, J., Posey, A. D., Scholler, J., Scholler, N., Bonneau, R. & June, C. H., Aug 14 2014, In : Blood. 124, 7, p. 1070-1080 11 p.

Research output: Contribution to journalArticle

Improved stability and half-life of fluorinated phosphotriesterase using Rosetta

Yang, C. Y., Renfrew, P. D., Olsen, A. J., Zhang, M., Yuvienco, C., Bonneau, R. & Montclare, J. K., Aug 18 2014, In : ChemBioChem. 15, 12, p. 1761-1764 4 p.

Research output: Contribution to journalArticle

Improving detection of driver genes: Power-law null model of copy number variation in cancer

Loohuis, L. O., Witzel, A. & Mishra, B., Nov 1 2014, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 11, 6, p. 1260-1263 4 p., 6883143.

Research output: Contribution to journalArticle

Inferring tree causal models of cancer progression with probability raising

Loohuis, L. O., Caravagna, G., Graudenzi, A., Ramazzotti, D., Mauri, G., Antoniotti, M. & Mishra, B., Oct 9 2014, In : PloS one. 9, 10, e108358.

Research output: Contribution to journalArticle

Intrinsic bioconjugation for site-specific protein PEGylation at N-terminal serine

Levine, P. M., Craven, T. W., Bonneau, R. & Kirshenbaum, K., Jul 4 2014, In : Chemical Communications. 50, 52, p. 6909-6912 4 p.

Research output: Contribution to journalArticle

Joint spatial division and multiplexing for mm-Wave channels

Adhikary, A., Al Safadi, E., Samimi, M. K., Wang, R., Caire, G., Rappaport, T. S. & Molisch, A. F., Jun 2014, In : IEEE Journal on Selected Areas in Communications. 32, 6, p. 1239-1255 17 p., 6823686.

Research output: Contribution to journalArticle

Krivine schemes are optimal

Naor, A. & Regev, O., Jan 1 2014, In : Proceedings of the American Mathematical Society. 142, 12, p. 4315-4320 6 p.

Research output: Contribution to journalArticle

Low-rank spatial channel estimation for millimeter wave cellular systems

Eliasi, P. A., Rangan, S. & Rappaport, T. S., Oct 17 2014, In : arXiv. 1410.4831.

Research output: Contribution to journalArticle

Millimeter-wave cellular wireless networks: Potentials and challenges

Rangan, S., Rappaport, T. S. & Erkip, E., Mar 2014, In : Proceedings of the IEEE. 102, 3, p. 366-385 20 p., 6732923.

Research output: Contribution to journalArticle

Millimeter wave channel modeling and cellular capacity evaluation

Akdeniz, M. R., Liu, Y., Samimi, M. K., Sun, S., Rangan, S., Rappaport, T. S. & Erkip, E., Jun 2014, In : IEEE Journal on Selected Areas in Communications. 32, 6, p. 1164-1179 16 p., 6834753.

Research output: Contribution to journalArticle

Millimeter-wave enhanced local area systems: A high-data-rate approach for future wireless networks

Ghosh, A., Thomas, T. A., Cudak, M. C., Ratasuk, R., Moorut, P., Vook, F. W., Rappaport, T. S., MacCartney, G. R., Sun, S. & Nie, S., Jun 2014, In : IEEE Journal on Selected Areas in Communications. 32, 6, p. 1152-1163 12 p., 6824746.

Research output: Contribution to journalArticle

MIMO for millimeter-wave wireless communications: Beamforming, spatial multiplexing, or both?

Sun, S., Rappaport, T. S., Heath, R. W., Nix, A. & Rangan, S., Dec 2014, In : IEEE Communications Magazine. 52, 12, p. 110-121 12 p., 6979962.

Research output: Contribution to journalArticle

MiR-Synth: A computational resource for the design of multi-site multi-target synthetic miRNAs

Laganà, A., Acunzo, M., Romano, G., Pulvirenti, A., Veneziano, D., Cascione, L., Giugno, R., Gasparini, P., Shasha, D., Ferro, A. & Croce, C. M., May 2014, In : Nucleic acids research. 42, 9, p. 5416-5425 10 p.

Research output: Contribution to journalArticle

Mobile's millimeter-wave makeover: Wireless engineers long considered high frequencies worthless for cellular systems. They couldn't be more wrong

Rappaport, T., Roh, W. & Cheun, K., Sep 2014, In : IEEE Spectrum. 51, 9, p. 34-58 25 p., 6882985.

Research output: Contribution to journalArticle

Negative Example Selection for Protein Function Prediction: The NoGO Database

Youngs, N., Penfold-Brown, D., Bonneau, R. & Shasha, D., Jun 2014, In : PLoS computational biology. 10, 6, e1003644.

Research output: Contribution to journalArticle

Neural machine translation by jointly learning to align and translate

Bahdanau, D., Cho, K. & Bengio, Y., 2014, In : arXiv. 1409.0473.

Research output: Contribution to journalArticle

Object detection and classification from large-scale cluttered indoor scans

Mattausch, O., Panozzo, D., Mura, C., Sorkine-Hornung, O. & Pajarola, R., May 2014, In : Computer Graphics Forum. 33, 2, p. 11-21 11 p.

Research output: Contribution to journalArticle

One third of dynamic protein expression profiles can be predicted by a simple rate equation

Tchourine, K., Poultney, C. S., Wang, L., Silva, G. M., Manohar, S., Mueller, C. L., Bonneau, R. & Vogel, C., Nov 1 2014, In : Molecular BioSystems. 10, 11, p. 2850-2862 13 p.

Research output: Contribution to journalArticle

Pattern-based quadrangulation for N-sided patches

Takayama, K., Panozzo, D. & Sorkine-Hornung, O., Aug 2014, In : Computer Graphics Forum. 33, 5, p. 177-184 8 p.

Research output: Contribution to journalArticle

Privacy amplification and nonmalleable extractors via character sums

Dodis, Y., Li, X., Wooley, T. D. & Zuckerman, D., 2014, In : SIAM Journal on Computing. 43, 2, p. 800-830 31 p.

Research output: Contribution to journalArticle

Protest in the Age of Social Media: Technology and Ukraine’s #Euromaidan

Tucker, J., Metzger, M., Penfold-Brown, D., Bonneau, R., Jost, J. & Nagler, J., 2014, Carnegie Reporter, 7, 4, p. 8-20.

Research output: Contribution to specialist publicationArticle

Protocol design contests

Sivaraman, A., Winstein, K., Varley, P., Batalha, J., Goyal, A., Das, S., Ma, J. & Balakrishnan, H., Jul 2014, In : Computer Communication Review. 44, 3, p. 38-44 7 p.

Research output: Contribution to journalArticle

Queueing with future information

Spencer, J., Sudan, M. & Xu, K., 2014, In : Annals of applied probability. 24, p. 2091-2142

Research output: Contribution to journalArticle

Queuing with future information

Spencer, J., Sudan, M. & Xu, K., Oct 2014, In : Annals of Applied Probability. 24, 5, p. 2091-2142 52 p.

Research output: Contribution to journalArticle

Radio propagation path loss models for 5G cellular networks in the 28 GHZ and 38 GHZ millimeter-wave bands

Sulyman, A., Nassar, A., Samimi, M., Maccartney, G., Rappaport, T. & Alsanie, A., Sep 1 2014, In : IEEE Communications Magazine. 52, 9, p. 78-86 9 p., 6894456.

Research output: Contribution to journalArticle

Rational design of topographical helix mimics as potent inhibitors of protein-protein interactions

Lao, B. B., Drew, K., Guarracino, D. A., Brewer, T. F., Heindel, D. W., Bonneau, R. & Arora, P. S., Jun 4 2014, In : Journal of the American Chemical Society. 136, 22, p. 7877-7888 12 p.

Research output: Contribution to journalArticle

Reading news with maps by exploiting spatial synonyms

Samet, H., Sankaranarayanan, J., Lieberman, M. D., Adelfio, M. D., Fruin, B. C., Lotkowski, J. M., Panozzo, D., Sperling, J. & Teitler, B. E., Sep 23 2014, In : Communications of the ACM. 57, 10, p. 64-77 14 p.

Research output: Contribution to journalArticle

Real-time continuous pose recovery of human hands using convolutional networks

Tompson, J., Stein, M., Lecun, Y. & Perlin, K., Aug 1 2014, In : ACM Transactions on Graphics. 33, 5, 169.

Research output: Contribution to journalArticle

S4: A spatial-spectral model for speckle suppression

Fergus, R., Hogg, D. W., Oppenheimer, R., Brenner, D. & Pueyo, L., Oct 20 2014, In : Astrophysical Journal. 794, 2, 161.

Research output: Contribution to journalArticle

sbv IMPROVER diagnostic signature challenge: Scoring strategies

Norel, R., Bilal, E., Conrad-Chemineau, N., Bonneau, R., de la Fuente, A., Jurisica, I., Marbach, D., Meyer, P., Rice, J. J., Tuller, T. & Stolovitzky, G., Jan 1 2014, In : Systems Biomedicine. 1, 4, p. 208-216 9 p.

Research output: Contribution to journalArticle

Semisynthesis of peptoid-protein hybrids by chemical ligation at serine

Levine, P. M., Craven, T. W., Bonneau, R. & Kirshenbaum, K., Mar 17 2014, In : Organic Letters. 16, 2, p. 512-515 4 p.

Research output: Contribution to journalArticle

Small wavelengths - Big potential: Millimeter wave propagation measurements for 5G

Deng, S., Slezak, C. J., MacCartney, G. R. & Rappaport, T. S., Nov 1 2014, In : Microwave Journal. p. 4-12 9 p.

Research output: Contribution to journalArticle

Strict minimizers for geometric optimization

Levi, Z. & Zorin, D., Nov 19 2014, In : ACM Transactions on Graphics. 33, 6

Research output: Contribution to journalArticle

Synthetic RNAs for gene regulation: deign principles and computational tools

Laganà, A., Shasha, D. & Croce, C. M., Dec 2014, In : Frontiers in Bioengineering and Biotechnology.

Research output: Contribution to journalArticle

Systems biology of cancer: A challenging expedition for clinical and quantitative biologists

Korsunsky, I., McGovern, K., LaGatta, T., Olde Loohuis, L., Grosso-Applewhite, T., Griffeth, N. & Mishra, B., Jan 1 2014, In : Frontiers in Bioengineering and Biotechnology. 2, AUG, 27.

Research output: Contribution to journalArticle

Systems of biology cancer: A challenging expedition for clinical and quantative biologists

Mishra, B. & Korsunsky, I., Jul 2014, In : Frontiers in Bioinformatics and Computational Biology. Special issue: Model Checking and Symbolic Methods in Biology

Research output: Contribution to journalArticle

The Loss Surfaces of Multilayer Networks

Choromanska, A., Henaff, M., Mathieu, M., Arous, G. B. & LeCun, Y., Nov 30 2014, In : arXiv.

Research output: Contribution to journalArticle

The singularity and the state of the art in artificial intelligence

Davis, E., Oct 2014, In : ACM Ubiquity.

Research output: Contribution to journalArticle

The spectral bundle method with second-order information

Helmberg, C., Overton, M. L. & Rendl, F., Jul 4 2014, In : Optimization Methods and Software. 29, 4, p. 855-876 22 p.

Research output: Contribution to journalArticle

Tight lower bound on the probability of a binomial exceeding its expectation

Greenberg, S. & Mohri, M., Mar 1 2014, In : Statistics and Probability Letters. 86, 1, p. 91-98 8 p.

Research output: Contribution to journalArticle

Topographic factor analysis: A Bayesian model for inferring brain networks from neural data

Manning, J. R., Ranganath, R., Norman, K. A. & Blei, D. M., May 7 2014, In : PloS one. 9, 5, e94914.

Research output: Contribution to journalArticle

Toward real-time indoor semantic segmentation using depth information

Couprie, C., Farabet, C., Najman, L. & Lecun, Y., 2014, In : Journal of Machine Learning Research.

Research output: Contribution to journalArticle

Towards cancer hybrid automata

Mishra, B., Loohuis, L. O. & Witzel, A., 2014, In : Information and Computation. Special Issue: Hybrid Systems and Biology

Research output: Contribution to journalArticle

Two-dimensional parameterized matching

Cole, R., Hazay, C., Lewenstein, M. & Tsur, D., Oct 30 2014, In : ACM Transactions on Algorithms. 11, 2

Research output: Contribution to journalArticle

Variational Analysis of the Spectral Abscissa at a Matrix with a Nongeneric Multiple Eigenvalue

Grundel, S. & Overton, M. L., Mar 1 2014, In : Set-Valued and Variational Analysis. 22, 1, p. 19-43 25 p.

Research output: Contribution to journalArticle

Verifiable computation using multiple provers

Blumberg, AJ., Thaler, J., Vu, V. & Walfish, M., Oct 2014, In : ePrint Cryptology archive.

Research output: Contribution to journalArticle

2013

6 Years of SMT-COMP

Barrett, C., Deters, M., De Moura, L., Oliveras, A. & Stump, A., Jan 1 2013, In : Journal of Automated Reasoning. 50, 3, p. 243-277 35 p.

Research output: Contribution to journalArticle