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2015

River: An intermediate language for stream processing

Soulé, R., Hirzel, M., Gedik, B. & Grimm, R., 2015, (Accepted/In press) In : Software - Practice and Experience.

Research output: Contribution to journalArticle

Safe for generations to come: Considerations of safety for millimeter waves in wireless communications

Wu, T., Rappaport, T. S. & Collins, C. M., Mar 1 2015, In : IEEE Microwave Magazine. 16, 2, p. 65-84 20 p., 7032050.

Research output: Contribution to journalArticle

Scalable Detection of Anomalous Patterns With Connectivity Constraints

Speakman, S., McFowland, E. & Neill, D., Oct 2 2015, In : Journal of Computational and Graphical Statistics. 24, 4, p. 1014-1033 20 p.

Research output: Contribution to journalArticle

Smoothness of Subdivision Surfaces with Boundary

Biermann, H., Grundel, S. & Zorin, D., Aug 1 2015, In : Constructive Approximation. 42, 1

Research output: Contribution to journalArticle

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

Kurtz, Z. D., Müller, C. L., Miraldi, E. R., Littman, D. R., Blaser, M. J. & Bonneau, R. A., May 1 2015, In : PLoS Computational Biology. 11, 5, e1004226.

Research output: Contribution to journalArticle

Static analysis and verification of aerospace software by abstract interpretation

Bertrane, J., Cousot, P., Cousot, R., Feret, J., Mauborgne, L., Miné, A. & Rival, X., Jan 1 2015, In : Foundations and Trends in Programming Languages. 2, 2-3, p. 71-190 120 p.

Research output: Contribution to journalArticle

Still Searching for Principles: A Response to Goodman et al. (2015)

Marcus, G. F. & Davis, E., Apr 18 2015, In : Psychological Science. 26, 4, p. 542-544 3 p.

Research output: Contribution to journalArticle

Suffix Trays and Suffix Trists: Structures for Faster Text Indexing

Cole, R., Kopelowitz, T. & Lewenstein, M., Jun 1 2015, In : Algorithmica. 72, 2, p. 450-466 17 p.

Research output: Contribution to journalArticle

Texture mapping real-world objects with hydrographics

Panozzo, D., Diamanti, O., Paris, S., Tarini, M., Sorkine, E. & Sorkine-Hornung, O., 2015, In : Eurographics Symposium on Geometry Processing. 34, 5, p. 65-75 11 p.

Research output: Contribution to journalArticle

The critical periphery in the growth of social protests

Barberá, P., Wang, N., Bonneau, R., Jost, J. T., Nagler, J., Tucker, J. & González-Bailón, S., Nov 1 2015, In : PLoS One. 10, 11, e0143611.

Research output: Contribution to journalArticle

The loss surfaces of multilayer networks

Choromanska, A., Henaff, M., Mathieu, M., Ben Arous, G. & LeCun, Y., 2015, In : Journal of Machine Learning Research. 38, p. 192-204 13 p.

Research output: Contribution to journalArticle

The unique games conjecture, integrality gap for cut problems and embeddability of negative-type metrics into ℓ1

Khot, S. A. & Vishnoi, N. K., Feb 1 2015, In : Journal of the ACM. 62, 1, 1 p.

Research output: Contribution to journalArticle

Tweeting From Left to Right: Is Online Political Communication More Than an Echo Chamber?

Barberá, P., Jost, J. T., Nagler, J., Tucker, J. A. & Bonneau, R., Oct 1 2015, In : Psychological Science. 26, 10, p. 1531-1542 12 p.

Research output: Contribution to journalArticle

Two-layer contractive encodings for learning stable nonlinear features

Schulz, H., Cho, K., Raiko, T. & Behnke, S., Apr 1 2015, In : Neural Networks. 64, p. 4-11 8 p.

Research output: Contribution to journalArticle

Upstart puzzles: Auction triplets

Shasha, D., Nov 1 2015, In : Communications of the ACM. 58, 11, p. 136 1 p.

Research output: Contribution to journalArticle

Upstart puzzles brighten up

Shasha, D., Aug 1 2015, In : Communications of the ACM. 58, 8, p. 96 1 p.

Research output: Contribution to journalArticle

Verifying computations without reexecuting them

Walfish, M. & Blumberg, A. J., Jan 28 2015, In : Communications of the ACM. 58, 2, p. 74-84 11 p.

Research output: Contribution to journalArticle

Wideband millimeter-wave propagation measurements and channel models for future wireless communication system design

Rappaport, T., MacCartney, G. R., Samimi, M. K. & Sun, S., Sep 1 2015, In : IEEE Transactions on Communications. 63, 9, p. 3029-3056 28 p., 7109864.

Research output: Contribution to journalArticle

2014

A brief overview of the NEBULA future internet architecture

Anderson, T., Birman, K., Broberg, R., Caesar, M., Comer, D., Cotton, C., Freedman, M. J., Haeberlen, A., Ives, Z. G., Krishnamurthy, A., Lehr, W., Loo, B. T., Mazières, D., Nicolosi, A., Smith, J. M., Stoica, I., Van Renesse, R., Walfish, M., Weatherspoon, H. & Yoo, C. S., Jul 2014, In : Computer Communication Review. 44, 3, p. 81-86 6 p.

Research output: Contribution to journalArticle

Accurate and efficient lighting for skinned models

Tarini, M., Panozzo, D. & Sorkine-Hornung, O., May 2014, In : Computer Graphics Forum. 33, 2, p. 421-428 8 p.

Research output: Contribution to journalArticle

AFM detection enables multiplexed low-cycle number PCR for biomarker assays

Mishra, B., Mikheiken, A., Olsen, A., Leslie, K., Gimzewski, J. K. & Reed, J., Jun 2014, In : Analytical Chemistry.

Research output: Contribution to journalArticle

Almost polynomial factor hardness for closest vector problem with preprocessing

Khot, S. A., Popat, P. & Vishnoi, N. K., 2014, In : SIAM Journal on Computing. 43, 3, p. 1184-1205 22 p.

Research output: Contribution to journalArticle

Appearance-mimicking surfaces

Schüller, C., Panozzo, D. & Sorkine-Hornung, O., Nov 19 2014, In : ACM Transactions on Graphics. 33, 6

Research output: Contribution to journalArticle

A Qualitative Calculus for Three-Dimensional Rotations

Asl, A. & Davis, E., Jan 1 2014, In : Spatial Cognition and Computation. 14, 1, p. 18-57 40 p.

Research output: Contribution to journalArticle

A rotamer library to enable modeling and design of peptoid foldamers

Renfrew, P. D., Craven, T. W., Butterfoss, G. L., Kirshenbaum, K. & Bonneau, R., Jun 18 2014, In : Journal of the American Chemical Society. 136, 24, p. 8772-8782 11 p.

Research output: Contribution to journalArticle

A simple deterministic reduction for the gap minimum distance of code problem

Austrin, P. & Khot, S., Oct 1 2014, In : IEEE Transactions on Information Theory. 60, 10, p. 6636-6645 10 p., 6868217.

Research output: Contribution to journalArticle

Assembling self-supporting structures

Deuss, M., Panozzo, D., Whiting, E., Liu, Y., Block, P., Sorkine-Hornung, O. & Pauly, M., Nov 19 2014, In : ACM Transactions on Graphics. 33, 6

Research output: Contribution to journalArticle

Atomic force microscopic detection enabling multiplexed low-cycle-number quantitative polymerase chain reaction for biomarker assays

Mikheikin, A., Olsen, A., Leslie, K., Mishra, B., Gimzewski, J. K. & Reed, J., Jul 1 2014, In : Analytical chemistry. 86, 13, p. 6180-6183 4 p.

Research output: Contribution to journalArticle

Bacillus subtilis systems biology: Applications of -Omics techniques to the study of endospore formation

Bate, A. R., Bonneau, R. & Eichenberger, P., 2014, In : Microbiology spectrum. 2, 2, TBS-0019-2013.

Research output: Contribution to journalArticle

Cancer hybrid automata: Model, beliefs and therapy

Olde Loohuis, L., Witzel, A. & Mishra, B., Aug 2014, In : Information and Computation. 236, p. 68-86 19 p.

Research output: Contribution to journalArticle

CAPRI: Efficient inference of cancer progression models from cross-sectional data

Ramazzotti, D., Caravagna, G., Olde Loohuis, L., Graudenzi, A., Korsunsky, I., Mauri, G., Antoniotti, M. & Mishra, B., Jul 31 2014, In : Bioinformatics. 31, 18, p. 3016-3026 11 p.

Research output: Contribution to journalArticle

Collier/OLF/EBF-Dependent Transcriptional Dynamics Control Pharyngeal Muscle Specification from Primed Cardiopharyngeal Progenitors

Razy-Krajka, F., Lam, K., Wang, W., Stolfi, A., Joly, M., Bonneau, R. & Christiaen, L., May 12 2014, In : Developmental Cell. 29, 3, p. 263_276

Research output: Contribution to journalArticle

Computational sustainability and artificial intelligence in the developing world

Quinn, J., Frias-Martinez, V. & Subramanian, L., Sep 1 2014, In : AI Magazine. 35, 3, p. 36-47 12 p.

Research output: Contribution to journalArticle

Open Access

Conformational preferences of Peptide - Peptoid hybrid oligomers

Butterfoss, G. L., Drew, K., Renfrew, P. D., Kirshenbaum, K. & Bonneau, R., Sep 1 2014, In : Biopolymers - Peptide Science Section. 102, 5, p. 369-378 10 p.

Research output: Contribution to journalArticle

Content-aware surface parameterization for interactive restoration of historical documents

Pal, K., Schüller, C., Panozzo, D., Sorkine-Hornung, O. & Weyrich, T., May 2014, In : Computer Graphics Forum. 33, 2, p. 401-409 9 p.

Research output: Contribution to journalArticle

CX3CR1+ mononuclear phagocytes support colitis-associated innate lymphoid cell production of IL-22

Longman, R. S., Diehl, G. E., Victorio, D. A., Huh, J. R., Galan, C., Miraldi, E. R., Swaminath, A., Bonneau, R., Scherl, E. J. & Littman, D. R., 2014, In : Journal of Experimental Medicine. 211, 8, p. 1571-1583 13 p.

Research output: Contribution to journalArticle

Dearly beloved: The five rules to help your parents die a peaceful death

Shasha, D., Mar 27 2014, Quartz Online magazine.

Research output: Contribution to specialist publicationArticle

Designing N-polyvector fields with complex polynomials

Diamanti, O., Vaxman, A., Panozzo, D. & Sorkine-Hornung, O., Aug 2014, In : Computer Graphics Forum. 33, 5, p. 1-11 11 p.

Research output: Contribution to journalArticle

Domain adaptation and sample bias correction theory and algorithm for regression

Cortes, C. & Mohri, M., Jan 30 2014, In : Theoretical Computer Science. 519, p. 103-126 24 p.

Research output: Contribution to journalArticle

Do we really need to learn to code?

Davis, E. & Marcus, G., Jun 7 2014, New Yorker (on-line edition).

Research output: Contribution to specialist publicationArticle

Efficient rounding for the noncommutative grothendieck inequality

Naor, A., Regev, O. & Vidick, T., Oct 2 2014, In : Theory of Computing. 10, p. 257-295 39 p.

Research output: Contribution to journalArticle

Efficient rounding for the noncommutative Grothendieck inequality

Naor, A., Regev, O. & Vidick, T., 2014, In : Theory of Computing. 10, 11, p. 257-295

Research output: Contribution to journalArticle

Elementary proofs of grothendieck theorems for completely bounded norms

Regev, O. & Vidick, T., Jan 1 2014, In : Journal of Operator Theory. 71, 2, p. 491-506 16 p.

Research output: Contribution to journalArticle

Engineered coiled-coil protein microfibers

Hume, J., Sun, J., Jacquet, R., Renfrew, P. D., Martin, J. A., Bonneau, R., Gilchrist, M. L. & Montclare, J. K., Oct 13 2014, In : Biomacromolecules. 15, 10, p. 3503-3510 8 p.

Research output: Contribution to journalArticle

Explorations on high dimensional landscapes

Sagun, L., Guney, V. U., Arous, G. B. & LeCun, Y., Dec 20 2014, In : arXiv.

Research output: Contribution to journalArticle

Exponentially increasing the capacity-to-computation ratio for conditional computation in deep learning

Cho, K. & Bengio, Y., 2014, In : arXiv. arXiv:1406.7362.

Research output: Contribution to journalArticle

FIREWACh: High-throughput functional detection of transcriptional regulatory modules in mammalian cells

Murtha, M., Tokcaer-Keskin, Z., Tang, Z., Strino, F., Chen, X., Wang, Y., Xi, X., Basilico, C., Brown, S., Bonneau, R., Kluger, Y. & Dailey, L., May 2014, In : Nature methods. 11, 5, p. 559-565 7 p.

Research output: Contribution to journalArticle

Frame fields: Anisotropic and non-orthogonal cross fields

Panozzo, D., Puppo, E., Tarini, M. & Sorkine-Hornung, O., Jan 1 2014, In : ACM Transactions on Graphics. 33, 4, 134.

Research output: Contribution to journalArticle

Genotet: An interactive web-based visual exploration framework to support validation of gene regulatory networks

Yu, B., Doraiswamy, H., Chen, X., Miraldi, E., Arrieta-Ortiz, M. L., Hafemeister, C., Madar, A., Bonneau, R. & Silva, C. T., Dec 31 2014, In : IEEE Transactions on Visualization and Computer Graphics. 20, 12, p. 1903-1912 10 p., 6876028.

Research output: Contribution to journalArticle