Research Output

Filter
Article
2019

Thermoresponsive Protein-Engineered Coiled-Coil Hydrogel for Sustained Small Molecule Release

Hill, L. K., Meleties, M., Katyal, P., Xie, X., Delgado-Fukushima, E., Jihad, T., Liu, C. F., O'Neill, S., Tu, R. S., Renfrew, P. D., Bonneau, R., Wadghiri, Y. Z. & Montclare, J., Jan 1 2019, (Accepted/In press) In : Biomacromolecules.

Research output: Contribution to journalArticle

Thoughts on load distribution and the role of programmable switches

McCauley, J., Krishnamurthy, A., Panda, A. & Shenker, S., Jan 1 2019, In : Computer Communication Review. 49, 1, p. 18-23 6 p.

Research output: Contribution to journalArticle

Towards region-specific propagation of protein functions

Koo, D. C. E. & Bonneau, R., May 15 2019, In : Bioinformatics (Oxford, England). 35, 10, p. 1737-1744 8 p.

Research output: Contribution to journalArticle

Open Access

Triwild: Robust triangulation with curve constraints

Hu, Y., Schneider, T., Gao, X., Zhou, Q., Jacobson, A., Zorin, D. & Panozzo, D., Jul 2019, In : ACM Transactions on Graphics. 38, 4, 52.

Research output: Contribution to journalArticle

Twenty-five years of information extraction

Grishman, R., Jan 1 2019, (Accepted/In press) In : Natural Language Engineering.

Research output: Contribution to journalArticle

VersionClimber: Version Upgrades without Tears

Pradal, C., Cohen-Boulakia, S., Valduriez, P. & Shasha, D., Sep 1 2019, In : Computing in Science and Engineering. 21, 5, p. 87-93 7 p., 8798946.

Research output: Contribution to journalArticle

Open Access

Wireless communications and applications above 100 GHz: Opportunities and challenges for 6g and beyond

Rappaport, T., Xing, Y., Kanhere, O., Ju, S., Madanayake, A., Mandal, S., Alkhateeb, A. & Trichopoulos, G. C., Jan 1 2019, In : IEEE Access. 7, p. 78729-78757 29 p., 8732419.

Research output: Contribution to journalArticle

Open Access
2018

Airburst-Generated Tsunamis

Berger, M. & Goodman, J., Apr 1 2018, In : Pure and Applied Geophysics. 175, 4, p. 1525-1543 19 p.

Research output: Contribution to journalArticle

Airway microbiota is associated with upregulation of the PI3K pathway in lung cancer

Tsay, J. C. J., Wu, B. G., Badri, M. H., Clemente, J. C., Shen, N., Meyn, P., Li, Y., Yie, T. A., Lhakhang, T., Olsen, E., Murthy, V., Michaud, G., Sulaiman, I., Tsirigos, A., Heguy, A., Pass, H., Weiden, M. D., Rom, W. N., Sterman, D. H., Bonneau, R. & 2 others, Blaser, M. J. & Segal, L. N., Nov 1 2018, In : American Journal of Respiratory and Critical Care Medicine. 198, 9, p. 1188-1198 11 p.

Research output: Contribution to journalArticle

A model-based embedding technique for segmenting customers

Jagabathula, S., Subramanian, L. & Venkataraman, A., Sep 1 2018, In : Operations Research. 66, 5, p. 1247-1267 21 p.

Research output: Contribution to journalArticle

An adaptive geometric search algorithm for macromolecular scaffold selection

Jiang, T., Renfrew, P. D., Drew, K., Youngs, N., Butterfoss, G., Bonneau, R. & Shasha, D., Sep 1 2018, In : Protein engineering, design & selection : PEDS. 31, 9, p. 345-354 10 p.

Research output: Contribution to journalArticle

Open Access

Analog Approximate-FFT 8/16-Beam Algorithms, Architectures and CMOS Circuits for 5G Beamforming MIMO Transceivers

Ariyarathna, V., Madanayake, A., Tang, X., Coelho, D., Cintra, R. J., Belostotski, L., Mandal, S. & Rappaport, T., May 1 2018, (Accepted/In press) In : IEEE Journal on Emerging and Selected Topics in Circuits and Systems.

Research output: Contribution to journalArticle

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

Raviram, R., Rocha, P. P., Luo, V. M., Swanzey, E., Miraldi, E. R., Chuong, E. B., Feschotte, C., Bonneau, R. & Skok, J. A., Dec 13 2018, In : Genome Biology. 19, 1, 216.

Research output: Contribution to journalArticle

Analytical Framework of Hybrid Beamforming in Multi-Cell Millimeter-Wave Systems

Sun, S., Rappaport, T., Shafi, M. & Tataria, H., Sep 13 2018, (Accepted/In press) In : IEEE Transactions on Wireless Communications.

Research output: Contribution to journalArticle

An ODE-based wall model for turbulent flow simulations

Berger, M. & Aftosmis, M. J., Jan 1 2018, In : AIAA Journal. 56, 2, p. 700-714 15 p.

Research output: Contribution to journalArticle

A Novel Domain Assembly Routine for Creating Full-Length Models of Membrane Proteins from Known Domain Structures

Koehler Leman, J. & Bonneau, R., Apr 3 2018, In : Biochemistry. 57, 13, p. 1939-1944 6 p.

Research output: Contribution to journalArticle

Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity

Zhang, X. S., Li, J., Krautkramer, K. A., Badri, M., Battaglia, T., Borbet, T. C., Koh, H., Ng, S., Sibley, R. A., Li, Y., Pathmasiri, W., Jindal, S., Shields-Cutler, R. R., Hillmann, B., Al-Ghalith, G. A., Ruiz, V. E., Livanos, A., Van‘t Wout, A. B., Nagalingam, N., Rogers, A. B. & 9 others, Sumner, S. J., Knights, D., Denu, J. M., Li, H., Ruggles, K. V., Bonneau, R., Williamson, R. A., Rauch, M. & Blaser, M. J., Jul 24 2018, In : eLife. 7, e37816.

Research output: Contribution to journalArticle

A parametric class of composites with a large achievable range of effective elastic properties

Ostanin, I., Ovchinnikov, G., Tozoni, D. C. & Zorin, D., Sep 1 2018, In : Journal of the Mechanics and Physics of Solids. 118, p. 204-217 14 p.

Research output: Contribution to journalArticle

Approximating the nash social welfare with indivisible items

Cole, R. & Gkatzelis, V., Jan 1 2018, In : SIAM Journal on Computing. 47, 3, p. 1211-1236 26 p.

Research output: Contribution to journalArticle

A probabilistic approach to discovering dynamic full-brain functional connectivity patterns

Manning, J. R., Zhu, X., Willke, T. L., Ranganath, R., Stachenfeld, K., Hasson, U., Blei, D. M. & Norman, K. A., Jan 1 2018, (Accepted/In press) In : NeuroImage.

Research output: Contribution to journalArticle

A quantitative perceptual model for tactile roughness

Tymms, C., Gardner, E. P. & Zorin, D., Nov 1 2018, In : ACM Transactions on Graphics. 37, 5, 168.

Research output: Contribution to journalArticle

Axis-aligned height-field block decomposition of 3D shapes

Muntoni, A., Livesu, M., Scateni, R., Sheffer, A. & Panozzo, D., Nov 1 2018, In : ACM Transactions on Graphics. 37, 5, 169.

Research output: Contribution to journalArticle

Causal data science for financial stress testing

Gao, G., Mishra, B. & Ramazzotti, D., Jan 1 2018, (Accepted/In press) In : Journal of Computational Science.

Research output: Contribution to journalArticle

C-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont

Xu, M., Pokrovskii, M., Ding, Y., Yi, R., Au, C., Harrison, O. J., Galan, C., Belkaid, Y., Bonneau, R. & Littman, D. R., Feb 15 2018, In : Nature. 554, 7692, p. 373-377 5 p.

Research output: Contribution to journalArticle

Computational-guided determination of the functional role of 447-52D long CDRH3

Kamau, E., Bonneau, R. & Kong, X. P., Dec 1 2018, In : Protein engineering, design & selection : PEDS. 31, 12, p. 479-487 9 p.

Research output: Contribution to journalArticle

Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks

Tchourine, K., Vogel, C. & Bonneau, R., Apr 10 2018, In : Cell Reports. 23, 2, p. 376-388 13 p.

Research output: Contribution to journalArticle

Decoupling simulation accuracy from mesh quality

Schneider, T., Hu, Y., Dumas, J., Gao, X., Panozzo, D. & Zorin, D., Nov 1 2018, In : ACM Transactions on Graphics. 37, 6, 280.

Research output: Contribution to journalArticle

DeepNF: Deep network fusion for protein function prediction

Gligorijević, V., Barot, M. & Bonneau, R., Nov 15 2018, In : Bioinformatics. 34, 22, p. 3873-3881 9 p.

Research output: Contribution to journalArticle

Design of Peptoid-peptide Macrocycles to Inhibit the β-catenin TCF Interaction in Prostate Cancer

Schneider, J. A., Craven, T. W., Kasper, A. C., Yun, C., Haugbro, M., Briggs, E. M., Svetlov, V., Nudler, E., Knaut, H., Bonneau, R., Garabedian, M. J., Kirshenbaum, K. & Logan, S. K., Dec 1 2018, In : Nature Communications. 9, 1, 4396.

Research output: Contribution to journalArticle

Discovering anomalous patterns in large digital pathology images

Somanchi, S., Neill, D. & Parwani, A. V., Nov 10 2018, In : Statistics in Medicine. 37, 25, p. 3599-3615 17 p.

Research output: Contribution to journalArticle

Dynamic neural turing machine with continuous and discrete addressing schemes

Gulcehre, C., Chandar, S., Cho, K. & Bengio, Y., Apr 1 2018, In : Neural Computation. 30, 4, p. 857-884 28 p.

Research output: Contribution to journalArticle

Feasibility and reliability of a virtual reality oculus platform to measure sensory integration for postural control in young adults

Lubetzky, A., Kary, E. E., Harel, D., Hujsak, B. & Perlin, K., Jan 25 2018, (Accepted/In press) In : Physiotherapy Theory and Practice. p. 1-16 16 p.

Research output: Contribution to journalArticle

Fine-grained attention mechanism for neural machine translation

Choi, H., Cho, K. & Bengio, Y., Apr 5 2018, In : Neurocomputing. 284, p. 171-176 6 p.

Research output: Contribution to journalArticle

Fungi stabilize connectivity in the lung and skin microbial ecosystems

Tipton, L., Müller, C. L., Kurtz, Z. D., Huang, L., Kleerup, E., Morris, A., Bonneau, R. & Ghedin, E., Jan 1 2018, In : Microbiome. 6, 1, 12.

Research output: Contribution to journalArticle

Generalized motorcycle graphs for imperfect quad-dominant meshes

Schertler, N., Panozzo, D., Gumhold, S. & Tarini, M., Jan 1 2018, In : ACM Transactions on Graphics. 37, 4, 155.

Research output: Contribution to journalArticle

Holojam in wonderland: Immersive mixed reality theater

Gochfeld, D., Brenner, C., Layng, K., Herscher, S., Defanti, C., Olko, M., Shinn, D., Riggs, S., Fernández-Vara, C. & Perlin, K., Aug 1 2018, In : Leonardo. 51, 4, p. 362-367 6 p.

Research output: Contribution to journalArticle

How Social Media Facilitates Political Protest: Information, Motivation, and Social Networks

Jost, J., Barberá, P., Bonneau, R., Langer, M., Metzger, M., Nagler, J., Sterling, J. & Tucker, J., Feb 1 2018, In : Political Psychology. 39, p. 85-118 34 p.

Research output: Contribution to journalArticle

Kneser graphs are like swiss cheese

Friedgut, E. & Regev, O., Jan 1 2018, In : Discrete Analysis. 2, 2018, p. 1-18 18 p.

Research output: Contribution to journalArticle

Liberal and Conservative Values: What We Can Learn From Congressional Tweets

Jones, K. L., Noorbaloochi, S., Jost, J. T., Bonneau, R., Nagler, J. & Tucker, J. A., Apr 2018, In : Political Psychology. 39, 2, p. 423-443

Research output: Contribution to journalArticle

Microwave vs. Millimeter-Wave Propagation Channels: Key Differences and Impact on 5G Cellular Systems

Shafi, M., Zhang, J., Tataria, H., Molisch, A. F., Sun, S., Rappaport, T., Tufvesson, F., Wu, S. & Kitao, K., Dec 1 2018, In : IEEE Communications Magazine. 56, 12, p. 14-20 7 p., 8570034.

Research output: Contribution to journalArticle

Non-malleable codes from additive combinatorics

Aggarwal, D., Dodis, Y. & Lovett, S., Jan 1 2018, In : SIAM Journal on Computing. 47, 2, p. 524-546 23 p.

Research output: Contribution to journalArticle

On monotonicity testing and boolean isoperimetric-type theorems

Khot, S., Minzer, D. & Safra, M., Jan 1 2018, In : SIAM Journal on Computing. 47, 6, p. 2238-2276 39 p.

Research output: Contribution to journalArticle

Origin of biomolecular games: Deception and molecular evolution

Massey, S. E. & Mishra, B., Sep 1 2018, In : Journal of the Royal Society Interface. 15, 146, 0429.

Research output: Contribution to journalArticle

ParCorr: efficient parallel methods to identify similar time series pairs across sliding windows

Yagoubi, D. E., Akbarinia, R., Kolev, B., Levchenko, O., Masseglia, F., Valduriez, P. & Shasha, D., Sep 1 2018, In : Data Mining and Knowledge Discovery. 32, 5, p. 1481-1507 27 p.

Research output: Contribution to journalArticle

Propagation Models and Performance Evaluation for 5G Millimeter-Wave Bands

Sun, S., Rappaport, T., Shafi, M., Tang, P., Zhang, J. & Smith, P. J., Jun 14 2018, (Accepted/In press) In : IEEE Transactions on Vehicular Technology.

Research output: Contribution to journalArticle

Public Safety Communications above 6 GHz: Challenges and Opportunities

Mezzavilla, M., Polese, M., Zanella, A., Dhananjay, A., Rangan, S., Kessler, C., Rappaport, T. & Zorzi, M., Jan 1 2018, In : IEEE Access. 6, p. 316-329 14 p.

Research output: Contribution to journalArticle

Quadrangulation of non-rigid objects using deformation metrics

Zhou, J., Campen, M., Zorin, D., Tu, C. & Silva, C., Jan 1 2018, (Accepted/In press) In : Computer Aided Geometric Design.

Research output: Contribution to journalArticle

Reading the (functional) writing on the (structural) wall: Multimodal fusion of brain structure and function via a deep neural network based translation approach reveals novel impairments in schizophrenia

Plis, S. M., Amin, M. F., Chekroud, A., Hjelm, D., Damaraju, E., Lee, H. J., Bustillo, J. R., Cho, K., Pearlson, G. D. & Calhoun, V. D., Nov 1 2018, In : NeuroImage. 181, p. 734-747 14 p.

Research output: Contribution to journalArticle