Research Output 1966 2020

2020

A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV

Johnson, J. S., De Veaux, N., Rives, A. W., Lahaye, X., Lucas, S. Y., Perot, B. P., Luka, M., Garcia-Paredes, V., Amon, L. M., Watters, A., Abdessalem, G., Aderem, A., Manel, N., Littman, D. R., Bonneau, R. & Ménager, M. M., Jan 21 2020, In : Cell Reports. 30, 3, p. 914-931.e9

Research output: Contribution to journalArticle

Open Access
Gene Regulatory Networks
Dendritic Cells
Interferons
Monocytes
Genes

Upstart puzzles feedback for foxes

Shasha, D., Jan 2020, In : Communications of the ACM. 63, 1, 1 p.

Research output: Contribution to journalEditorial

2019

1.1 Deep Learning Hardware: Past, Present, and Future

LeCun, Y., Mar 6 2019, 2019 IEEE International Solid-State Circuits Conference, ISSCC 2019. Institute of Electrical and Electronics Engineers Inc., p. 12-19 8 p. 8662396. (Digest of Technical Papers - IEEE International Solid-State Circuits Conference; vol. 2019-February).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hardware
Neural networks
Deep learning

Accelerating eulerian fluid simulation with convolutional networks

Tompson, J., Schlachter, K., Sprechmann, P. & Perlin, K., Jan 1 2019.

Research output: Contribution to conferencePaper

Linear systems
simulation
Unsupervised learning
Fluids
Euler equations

Adaptation based on generalized discrepancy

Cortes, C., Mohri, M. & Medina, A. M., Jan 1 2019, In : Journal of Machine Learning Research. 20, p. 1-30 30 p.

Research output: Contribution to journalArticle

Discrepancy
Convex optimization
Training Samples
Convex Optimization
Theoretical Analysis

A demonstration of dynamic drawing guidance via electromagnetic haptic feedback

Langerak, T., Zarate, J., Vechev, V., Panozzo, D. & Hilliges, O., Oct 14 2019, UIST 2019 Adjunct - Adjunct Publication of the 32nd Annual ACM Symposium on User Interface Software and Technology. Association for Computing Machinery, Inc, p. 110-112 3 p. (UIST 2019 Adjunct - Adjunct Publication of the 32nd Annual ACM Symposium on User Interface Software and Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electromagnets
Demonstrations
Trajectories
Feedback

An algorithmic approach to limit cycles of nonlinear differential systems: The averaging method revisited

Huang, B. & Yap, C., Jul 8 2019, ISSAC 2019 - Proceedings of the 2019 ACM International Symposium on Symbolic and Algebraic Computation. Association for Computing Machinery, p. 211-218 8 p. (Proceedings of the International Symposium on Symbolic and Algebraic Computation, ISSAC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Averaging Method
Differential System
Limit Cycle
Nonlinear Systems
Averaging
Steepest descent method
Nonsmooth Function
Gradient methods
Line Search
Gradient Method

An Improved RNS Variant of the BFV Homomorphic Encryption Scheme

Halevi, S., Polyakov, Y. & Shoup, V., Jan 1 2019, Topics in Cryptology – CT-RSA 2019 - The Cryptographers’ Track at the RSA Conference 2019, Proceedings. Matsui, M. (ed.). Springer-Verlag, p. 83-105 23 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11405 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Residue number System
Chinese remainder theorem
Homomorphic Encryption
Numbering systems
Fans

An oculus rift assessment of dynamic balance by head mobility in a virtual park scene: A pilot study

Lubetzky, A., Hujsak, B. D., Fu, G. & Perlin, K., Jan 1 2019, In : Motor Control. 23, 1, p. 127-142 16 p.

Research output: Contribution to journalArticle

Head
Head Movements
Biomechanical Phenomena

A stretch-sensing soft glove for interactive hand pose estimation

Glauser, O., Wu, S., Panozzo, D., Hilliges, O. & Sorkine-Hornung, O., Jul 28 2019, ACM SIGGRAPH 2019 Emerging Technologies, SIGGRAPH 2019. Association for Computing Machinery, Inc, (ACM SIGGRAPH 2019 Emerging Technologies, SIGGRAPH 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Capacitive sensors
Sensor arrays
Calibration
Fabrication
Sensors

Attention-based mixture density recurrent networks for history-based recommendation

Wang, T., Cho, K. & Wen, M., Aug 5 2019, 1st International Workshop on Deep Learning Practice for High-Dimensional Sparse Data: Bridging Theory and Practice, DLP 2019 with KDD 2019. Association for Computing Machinery, 3341254. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
History
Marketing
Recommender systems
Experiments

Author Correction: c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont (Nature, (2018), 554, 7692, (373-377), 10.1038/nature25500)

Xu, M., Pokrovskii, M., Ding, Y., Yi, R., Au, C., Harrison, O. J., Galan, C., Belkaid, Y., Bonneau, R. & Littman, D. R., Feb 21 2019, In : Nature. 566, 7744, p. E7

Research output: Contribution to journalComment/debate

Regulatory T-Lymphocytes

Autogenerating fast packet-processing code using program synthesis

Gao, X., Kim, T., Varma, A. K., Sivaraman, A. & Narayana, S., Nov 13 2019, HotNets 2019 - Proceedings of the 18th ACM Workshop on Hot Topics in Networks. Association for Computing Machinery, Inc, p. 150-160 11 p. (HotNets 2019 - Proceedings of the 18th ACM Workshop on Hot Topics in Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Processing
Substrates
Switches
Hardware
Simulators

A wideband sliding correlator-based channel sounder with synchronization in 65 nm CMOS

Wu, T., Rappaport, T., Knox, M. E. & Shahrjerdi, D., Jan 1 2019, 2019 IEEE International Symposium on Circuits and Systems, ISCAS 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8702223. (Proceedings - IEEE International Symposium on Circuits and Systems; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Correlators
Synchronization
Acoustic waves
Millimeter waves
Ultra-wideband (UWB)

CAVe: Making collective virtual narrative

Layng, K., Perlin, K., Herscher, S., Brenner, C. & Meduri, T., Jul 28 2019, ACM SIGGRAPH 2019 Art Gallery, SIGGRAPH 2019. Association for Computing Machinery, Inc, (ACM SIGGRAPH 2019 Art Gallery, SIGGRAPH 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Theaters
Virtual reality

CAVE: Making collective virtual narrative

Layng, K., Perlin, K., Herscher, S., Brenner, C. & Meduri, T., Aug 1 2019, In : Leonardo. 52, 4, p. 349-356 8 p.

Research output: Contribution to journalArticle

Theaters
Virtual reality

CAVRN: An exploration and evaluation of a collective audience virtual reality nexus experience

Herscher, S., DeFanti, C., Vitovitch, N. G., Brenner, C., Xia, H., Layng, K. & Perlin, K., Oct 17 2019, UIST 2019 - Proceedings of the 32nd Annual ACM Symposium on User Interface Software and Technology. Association for Computing Machinery, Inc, p. 1137-1150 14 p. (UIST 2019 - Proceedings of the 32nd Annual ACM Symposium on User Interface Software and Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual reality
Ecosystems
Theaters
Momentum
Throughput

Cellogram: On-the-Fly Traction Force Microscopy

Lendenmann, T., Schneider, T., Dumas, J., Tarini, M., Giampietro, C., Bajpai, A., Chen, W., Gerber, J., Poulikakos, D., Ferrari, A. & Panozzo, D., Oct 9 2019, In : Nano Letters. 19, 10, p. 6742-6750 9 p.

Research output: Contribution to journalArticle

traction
Microscopic examination
microscopy
Image processing
Cells

Challenges using head-mounted displays in shared and social spaces

Gugenheimer, J., McGill, M., Steinicke, F., Mai, C., Williamson, J. & Perlin, K., May 2 2019, CHI EA 2019 - Extended Abstracts of the 2019 CHI Conference on Human Factors in Computing Systems. Association for Computing Machinery, 3299028. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Display devices

Change surfaces for expressive multidimensional changepoints and counterfactual prediction

Herlands, W., Neill, D., Nickisch, H. & Wilson, A. G., Jun 1 2019, In : Journal of Machine Learning Research. 20

Research output: Contribution to journalArticle

Change Point
Prediction
Gaussian Process
Change-point Model
Posterior Mean

Characterization of Transcriptional Regulatory Networks that Promote and Restrict Identities and Functions of Intestinal Innate Lymphoid Cells

Pokrovskii, M., Hall, J. A., Ochayon, D. E., Yi, R., Chaimowitz, N. S., Seelamneni, H., Carriero, N., Watters, A., Waggoner, S. N., Littman, D. R., Bonneau, R. & Miraldi, E. R., Jul 16 2019, In : Immunity. 51, 1, p. 185-197.e6

Research output: Contribution to journalArticle

Gene Regulatory Networks
Homeostasis
Transcription Factors
Genome
Lymphocytes

Clock Bound Repair for Timed Systems

Kölbl, M., Leue, S. & Wies, T., Jan 1 2019, Computer Aided Verification - 31st International Conference, CAV 2019, Proceedings. Dillig, I. & Tasiran, S. (eds.). Springer-Verlag, p. 79-96 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11561 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Repair
Clocks
Timed Automata
Admissibility
Diagnostics

Conditional Molecular Design with Deep Generative Models

Kang, S. & Cho, K., Jan 28 2019, In : Journal of Chemical Information and Modeling. 59, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

Molecules
drug
learning
performance
Learning systems
Index System
Wireless Networks
Wireless networks
Teaching
Education

Curvislicer: Slightly curved slicing for 3-axis printers

Etienne, J., Ray, N., Panozzo, D., Hornus, S., Wang, C. C. L., Martínez, J., McMains, S., Alexa, M., Wyvill, B. & Lefebvre, S., Jul 2019, In : ACM Transactions on Graphics. 38, 4, 81.

Research output: Contribution to journalArticle

Printers (computer)
3D printers
Deposits
Sampling
Fabrication

Debugging machine learning pipelines

Lourenço, R., Freire, J. & Shasha, D., Jun 30 2019, Proceedings of the 3rd Workshop on Data Management for End-To-End Machine Learning, DEEM 2019 - In conjunction with the 2019 ACM SIGMOD/PODS Conference. Association for Computing Machinery, 3329489. (Proceedings of the ACM SIGMOD International Conference on Management of Data).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning systems
Pipelines
Costs

Deception, identity, and security: The game theory of sybil attacks

Casey, W., Kellner, A., Memarmoshrefi, P., Morales, J. A. & Mishra, B., Jan 1 2019, In : Communications of the ACM. 62, 1, p. 85-93 9 p.

Research output: Contribution to journalReview article

Game theory

Deferred runtime pipelining for contentious multicore software transactions

Mu, S., Angel, S. & Shasha, D., Mar 25 2019, Proceedings of the 14th EuroSys Conference 2019. Association for Computing Machinery, Inc, 3303966. (Proceedings of the 14th EuroSys Conference 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Throughput
Concurrency control
Data storage equipment
Opacity
Network protocols

Deformation capture via soft and stretchable sensor arrays

Glauser, O., Panozzo, D., Hilliges, O. & Sorkine-Hornung, O., Apr 1 2019, In : ACM Transactions on Graphics. 38, 2, 16.

Research output: Contribution to journalArticle

Open Access
Sensor arrays
Hardware
Pipelines
Fabrication
Geometry

DesIGN: Design inspiration from generative networks

Sbai, O., Elhoseiny, M., Bordes, A., LeCun, Y. & Couprie, C., Jan 1 2019, Computer Vision – ECCV 2018 Workshops, Proceedings. Leal-Taixé, L. & Roth, S. (eds.). Springer-Verlag, p. 37-44 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11131 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Loss Function
Shape Design
Evaluation
Network Architecture
Texture

Detecting spatial clusters of disease infection risk using sparsely sampled social media mobility patterns

Souza, R. C. S. N. P., Assunção, R. M., Neill, D. B. & Meira, W., Nov 5 2019, 27th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, ACM SIGSPATIAL GIS 2019. Banaei-Kashani, F., Trajcevski, G., Guting, R. H., Kulik, L. & Newsam, S. (eds.). Association for Computing Machinery, p. 359-368 10 p. (GIS: Proceedings of the ACM International Symposium on Advances in Geographic Information Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Social Media
Infection
detection method
Cluster Detection
public health

Dialogwae: Multimodal response generation with conditional Wasserstein auto-encoder

Gu, X., Cho, K., Ha, J. W. & Kim, S., Jan 1 2019.

Research output: Contribution to conferencePaper

Normal distribution
conversation
Neural networks
neural network
Experiments

Diffusion scattering transforms on graphs

Gama, F., Bruna Estrach, J. & Ribeiro, A., Jan 1 2019.

Research output: Contribution to conferencePaper

Scattering
Computer vision
data analysis
Graph

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

Fehlner-Peach, H., Magnabosco, C., Raghavan, V., Scher, J. U., Tett, A., Cox, L. M., Gottsegen, C., Watters, A., Wiltshire-Gordon, J. D., Segata, N., Bonneau, R. & Littman, D. R., Nov 13 2019, In : Cell Host and Microbe. 26, 5, p. 680-690.e5

Research output: Contribution to journalArticle

Prevotella
Polysaccharides
Metagenomics
Diet
Genes

Editorial: Network Bioscience

Antoniotti, M., Mishra, B. & Pellegrini, M., Nov 20 2019, In : Frontiers in Genetics. 10, 1160.

Research output: Contribution to journalEditorial

Open Access

Effective subdivision algorithm for isolating zeros of real systems of equations, with complexity analysis

Xu, J. & Yap, C., Jul 8 2019, ISSAC 2019 - Proceedings of the 2019 ACM International Symposium on Symbolic and Algebraic Computation. Association for Computing Machinery, p. 355-362 8 p. (Proceedings of the International Symposium on Symbolic and Algebraic Computation, ISSAC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Subdivision Algorithm
Complexity Analysis
System of equations
Zero
Zero of a function

Elites tweet to get feet off the streets: Measuring regime social media strategies during protest

Munger, K., Bonneau, R., Nagler, J. & Tucker, J., Oct 1 2019, In : Political Science Research and Methods. 7, 4, p. 815-834 20 p.

Research output: Contribution to journalArticle

Open Access
social media
protest
elite
regime
twitter

Enabling a permanent revolution in internet architecture

McCauley, J., Harchol, Y., Panda, A., Raghavan, B. & Shenker, S., Aug 19 2019, SIGCOMM 2019 - Proceedings of the 2019 Conference of the ACM Special Interest Group on Data Communication. Association for Computing Machinery, Inc, p. 1-14 14 p. (SIGCOMM 2019 - Proceedings of the 2019 Conference of the ACM Special Interest Group on Data Communication).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
permanent revolution
Internet
Slate
functionality

Energy-based generative adversarial networks

Zhao, J., Mathieu, M. & LeCun, Y., Jan 1 2019.

Research output: Contribution to conferencePaper

Discriminators
energy
Image resolution
Logistics
Classifiers

Ensuring connectivity via data plane mechanisms

Liu, J., Panda, A., Singla, A., Godfrey, B., Schapira, M. & Shenker, S., Jan 1 2019, Proceedings of the 10th USENIX Symposium on Networked Systems Design and Implementation, NSDI 2013. USENIX Association, p. 113-126 14 p. (Proceedings of the 10th USENIX Symposium on Networked Systems Design and Implementation, NSDI 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Network architecture
Availability
Recovery

Entropy-SGD: Biasing gradient descent into wide valleys. International Conference on Learning Representations (ICLR) 2017

Chaudhari, P., Choromanska, A., Soatto, S., LeCun, Y., Baldassi, C., Borgs, C., Chayes, J., Sagun, L. & Zecchina, R., Jan 1 2019.

Research output: Contribution to conferencePaper

entropy
Entropy
energy
neural network
learning

Existential monadic second order logic on random rooted trees

Holroyd, A. E., Levy, A., Podder, M. & Spencer, J., Jan 1 2019, In : Discrete Mathematics. 342, 1, p. 152-167 16 p.

Research output: Contribution to journalArticle

Monadic Second-order Logic
Random Trees
Rooted Trees
Coloring
Finiteness

Exploiting high millimeter wave bands for military communications, applications, and design

Harvey, J. F., Steer, M. B. & Rappaport, T., Jan 1 2019, In : IEEE Access. 7, p. 52350-52359 10 p., 8692347.

Research output: Contribution to journalArticle

Military communications
Millimeter waves
Communication
Local area networks
Telecommunication networks

Exploring configuration of mixed reality spaces for communication

He, Z., Perlin, K. & Rosenberg, K. T., May 2 2019, CHI EA 2019 - Extended Abstracts of the 2019 CHI Conference on Human Factors in Computing Systems. Association for Computing Machinery, 3312761. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Communication

Fast methods for finding significant motifs on labelled multi-relational networks

Micale, G., Pulvirenti, A., Ferro, A., Giugno, R. & Shasha, D., Apr 15 2019, In : Journal of Complex Networks. 7, 6, p. 817-837 21 p.

Research output: Contribution to journalArticle

Labels
Analytical models
Multigraph
Proteins
Analytical Model

Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics

Aparo, A., Bonnici, V., Micale, G., Ferro, A., Shasha, D., Pulvirenti, A. & Giugno, R., Mar 1 2019, In : Interdisciplinary Sciences: Computational Life Sciences. 11, 1, p. 21-32 12 p.

Research output: Contribution to journalArticle

Heuristic algorithms
Experiments
Heuristics

Feature Preserving Octree-Based Hexahedral Meshing

Gao, X., Shen, H. & Panozzo, D., Jan 1 2019, In : Computer Graphics Forum. 38, 5, p. 135-149 15 p.

Research output: Contribution to journalArticle

Scaffolds
Computer aided design
Tuning
Pipelines
Statistics

For Whom the Bot Tolls: A Neural Networks Approach to Measuring Political Orientation of Twitter Bots in Russia

Stukal, D., Sanovich, S., Tucker, J. & Bonneau, R., Apr 1 2019, In : SAGE Open. 9, 2

Research output: Contribution to journalArticle

Open Access
twitter
political attitude
neural network
Russia
social media

GAIUS: A new mobile content creation and diffusion ecosystem for emerging regions

Ahmad, T., Zaki, Y., Pötsh, T., Chen, J., Sathiaseelan, A. & Subramanian, L., Jan 4 2019, Proceedings of the 10th International Conference on Information and Communication Technologies and Development, ICTD 2019. Association for Computing Machinery, a34

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ecosystems
Websites
Internet