Research Output

2020

A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV

Johnson, J. S., De Veaux, N., Rives, A. W., Lahaye, X., Lucas, S. Y., Perot, B. P., Luka, M., Garcia-Paredes, V., Amon, L. M., Watters, A., Abdessalem, G., Aderem, A., Manel, N., Littman, D. R., Bonneau, R. & Ménager, M. M., Jan 21 2020, In : Cell Reports. 30, 3, p. 914-931.e9

Research output: Contribution to journalArticle

Open Access

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

Gabitto, M. I., Rasmussen, A., Wapinski, O., Allaway, K., Carriero, N., Fishell, G. J. & Bonneau, R., Dec 1 2020, In : Nature communications. 11, 1, 747.

Research output: Contribution to journalArticle

Open Access

Discrepancy-Based Theory and Algorithms for Forecasting Non-Stationary Time Series

Kuznetsov, V. & Mohri, M., Jan 1 2020, (Accepted/In press) In : Annals of Mathematics and Artificial Intelligence.

Research output: Contribution to journalArticle

Gene regulatory network reconstruction using single-cell rna sequencing of barcoded genotypes in diverse environments

Jackson, C. A., Castro, D. M., Saldi, G. A., Bonneau, R. & Gresham, D., Jan 2020, In : eLife. 9, e51254.

Research output: Contribution to journalArticle

Open Access

Prospero’s Books: A Distributed Architecture for AI: Invited Extended Abstract

Mishra, B. B., Jan 1 2020, Distributed Computing and Internet Technology - 16th International Conference, ICDCIT 2020, Proceedings. Hung, D. V. & D’Souza, M. (eds.). Springer, p. 41-49 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11969 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Towards a Low-SWaP 1024-Beam Digital Array: A 32-Beam Subsystem at 5.8 GHz

Madanayake, A., Mandal, S., Rappaport, T. S., Ariyarathna, V., Madishetty, S., Pulipati, S., Cintra, R. J., Coelho, D., Oliviera, R., Bayer, F. M. & Belostotski, L., Feb 2020, In : IEEE Transactions on Antennas and Propagation. 68, 2, p. 900-912 13 p., 8826444.

Research output: Contribution to journalArticle

Upstart puzzles feedback for foxes

Shasha, D., Jan 2020, In : Communications of the ACM. 63, 1, 1 p.

Research output: Contribution to journalEditorial

2019

1.1 Deep Learning Hardware: Past, Present, and Future

LeCun, Y., Mar 6 2019, 2019 IEEE International Solid-State Circuits Conference, ISSCC 2019. Institute of Electrical and Electronics Engineers Inc., p. 12-19 8 p. 8662396. (Digest of Technical Papers - IEEE International Solid-State Circuits Conference; vol. 2019-February).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accelerating eulerian fluid simulation with convolutional networks

Tompson, J., Schlachter, K., Sprechmann, P. & Perlin, K., Jan 1 2019.

Research output: Contribution to conferencePaper

Adaptation based on generalized discrepancy

Cortes, C., Mohri, M. & Medina, A. M., Jan 1 2019, In : Journal of Machine Learning Research. 20, p. 1-30 30 p.

Research output: Contribution to journalArticle

A demonstration of dynamic drawing guidance via electromagnetic haptic feedback

Langerak, T., Zarate, J., Vechev, V., Panozzo, D. & Hilliges, O., Oct 14 2019, UIST 2019 Adjunct - Adjunct Publication of the 32nd Annual ACM Symposium on User Interface Software and Technology. Association for Computing Machinery, Inc, p. 110-112 3 p. (UIST 2019 Adjunct - Adjunct Publication of the 32nd Annual ACM Symposium on User Interface Software and Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Direct-Conversion Digital Beamforming Array Receiver with 800 MHz Channel Bandwidth at 28 GHz using Xilinx RF SoC

Pulipati, S., Ariyarathna, V., Silva, U. D., Akram, N., Alwan, E., Madanayake, A., Mandal, S. & Rappaport, T. S., Nov 2019, 2019 IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems, COMCAS 2019. Institute of Electrical and Electronics Engineers Inc., 8958039. (2019 IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems, COMCAS 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An algorithmic approach to limit cycles of nonlinear differential systems: The averaging method revisited

Huang, B. & Yap, C., Jul 8 2019, ISSAC 2019 - Proceedings of the 2019 ACM International Symposium on Symbolic and Algebraic Computation. Association for Computing Machinery, p. 211-218 8 p. (Proceedings of the International Symposium on Symbolic and Algebraic Computation, ISSAC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

An Improved RNS Variant of the BFV Homomorphic Encryption Scheme

Halevi, S., Polyakov, Y. & Shoup, V., Jan 1 2019, Topics in Cryptology – CT-RSA 2019 - The Cryptographers’ Track at the RSA Conference 2019, Proceedings. Matsui, M. (ed.). Springer-Verlag, p. 83-105 23 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11405 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An oculus rift assessment of dynamic balance by head mobility in a virtual park scene: A pilot study

Lubetzky, A., Hujsak, B. D., Fu, G. & Perlin, K., Jan 1 2019, In : Motor Control. 23, 1, p. 127-142 16 p.

Research output: Contribution to journalArticle

Approximating orthogonal matrices with effective givens factorization

Frerix, T. & Bruna, J., Jan 1 2019, 36th International Conference on Machine Learning, ICML 2019. International Machine Learning Society (IMLS), p. 3509-3517 9 p. (36th International Conference on Machine Learning, ICML 2019; vol. 2019-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A stretch-sensing soft glove for interactive hand pose estimation

Glauser, O., Wu, S., Panozzo, D., Hilliges, O. & Sorkine-Hornung, O., Jul 28 2019, ACM SIGGRAPH 2019 Emerging Technologies, SIGGRAPH 2019. Association for Computing Machinery, Inc, (ACM SIGGRAPH 2019 Emerging Technologies, SIGGRAPH 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Study of Interference Distributions in Millimeter Wave Cellular Networks

Alizadeh, A., Vu, M. & Rappaport, T. S., Nov 2019, 2019 IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems, COMCAS 2019. Institute of Electrical and Electronics Engineers Inc., 8958330. (2019 IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems, COMCAS 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Attention-based mixture density recurrent networks for history-based recommendation

Wang, T., Cho, K. & Wen, M., Aug 5 2019, 1st International Workshop on Deep Learning Practice for High-Dimensional Sparse Data: Bridging Theory and Practice, DLP 2019 with KDD 2019. Association for Computing Machinery, 3341254. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Author Correction: c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont (Nature, (2018), 554, 7692, (373-377), 10.1038/nature25500)

Xu, M., Pokrovskii, M., Ding, Y., Yi, R., Au, C., Harrison, O. J., Galan, C., Belkaid, Y., Bonneau, R. & Littman, D. R., Feb 21 2019, In : Nature. 566, 7744, p. E7

Research output: Contribution to journalComment/debate

Autogenerating fast packet-processing code using program synthesis

Gao, X., Kim, T., Varma, A. K., Sivaraman, A. & Narayana, S., Nov 13 2019, HotNets 2019 - Proceedings of the 18th ACM Workshop on Hot Topics in Networks. Association for Computing Machinery, Inc, p. 150-160 11 p. (HotNets 2019 - Proceedings of the 18th ACM Workshop on Hot Topics in Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A wideband sliding correlator-based channel sounder with synchronization in 65 nm CMOS

Wu, T., Rappaport, T., Knox, M. E. & Shahrjerdi, D., Jan 1 2019, 2019 IEEE International Symposium on Circuits and Systems, ISCAS 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8702223. (Proceedings - IEEE International Symposium on Circuits and Systems; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

CAVe: Making collective virtual narrative

Layng, K., Perlin, K., Herscher, S., Brenner, C. & Meduri, T., Jul 28 2019, ACM SIGGRAPH 2019 Art Gallery, SIGGRAPH 2019. Association for Computing Machinery, Inc, (ACM SIGGRAPH 2019 Art Gallery, SIGGRAPH 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

CAVE: Making collective virtual narrative

Layng, K., Perlin, K., Herscher, S., Brenner, C. & Meduri, T., Aug 1 2019, In : Leonardo. 52, 4, p. 349-356 8 p.

Research output: Contribution to journalArticle

CAVRN: An exploration and evaluation of a collective audience virtual reality nexus experience

Herscher, S., DeFanti, C., Vitovitch, N. G., Brenner, C., Xia, H., Layng, K. & Perlin, K., Oct 17 2019, UIST 2019 - Proceedings of the 32nd Annual ACM Symposium on User Interface Software and Technology. Association for Computing Machinery, Inc, p. 1137-1150 14 p. (UIST 2019 - Proceedings of the 32nd Annual ACM Symposium on User Interface Software and Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cellogram: On-the-Fly Traction Force Microscopy

Lendenmann, T., Schneider, T., Dumas, J., Tarini, M., Giampietro, C., Bajpai, A., Chen, W., Gerber, J., Poulikakos, D., Ferrari, A. & Panozzo, D., Oct 9 2019, In : Nano Letters. 19, 10, p. 6742-6750 9 p.

Research output: Contribution to journalArticle

Challenges using head-mounted displays in shared and social spaces

Gugenheimer, J., McGill, M., Steinicke, F., Mai, C., Williamson, J. & Perlin, K., May 2 2019, CHI EA 2019 - Extended Abstracts of the 2019 CHI Conference on Human Factors in Computing Systems. Association for Computing Machinery, 3299028. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Change surfaces for expressive multidimensional changepoints and counterfactual prediction

Herlands, W., Neill, D. B., Nickisch, H. & Wilson, A. G., Jun 1 2019, In : Journal of Machine Learning Research. 20

Research output: Contribution to journalArticle

Characterization of Transcriptional Regulatory Networks that Promote and Restrict Identities and Functions of Intestinal Innate Lymphoid Cells

Pokrovskii, M., Hall, J. A., Ochayon, D. E., Yi, R., Chaimowitz, N. S., Seelamneni, H., Carriero, N., Watters, A., Waggoner, S. N., Littman, D. R., Bonneau, R. & Miraldi, E. R., Jul 16 2019, In : Immunity. 51, 1, p. 185-197.e6

Research output: Contribution to journalArticle

Clock Bound Repair for Timed Systems

Kölbl, M., Leue, S. & Wies, T., Jan 1 2019, Computer Aided Verification - 31st International Conference, CAV 2019, Proceedings. Dillig, I. & Tasiran, S. (eds.). Springer-Verlag, p. 79-96 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11561 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Conditional Molecular Design with Deep Generative Models

Kang, S. & Cho, K., Jan 28 2019, In : Journal of Chemical Information and Modeling. 59, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

Critical Velocity Ionization in Substellar Atmospheres

Wilson, A. D., Dobbs-Dixon, I., Diver, D. A. & Stark, C. R., Dec 1 2019, In : Astrophysical Journal. 887, 2, p. 138

Research output: Contribution to journalArticle

Curvislicer: Slightly curved slicing for 3-axis printers

Etienne, J., Ray, N., Panozzo, D., Hornus, S., Wang, C. C. L., Martínez, J., McMains, S., Alexa, M., Wyvill, B. & Lefebvre, S., Jul 2019, In : ACM Transactions on Graphics. 38, 4, 81.

Research output: Contribution to journalArticle

Debugging machine learning pipelines

Lourenço, R., Freire, J. & Shasha, D., Jun 30 2019, Proceedings of the 3rd Workshop on Data Management for End-To-End Machine Learning, DEEM 2019 - In conjunction with the 2019 ACM SIGMOD/PODS Conference. Association for Computing Machinery, 3329489. (Proceedings of the ACM SIGMOD International Conference on Management of Data).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deception, identity, and security: The game theory of sybil attacks

Casey, W., Kellner, A., Memarmoshrefi, P., Morales, J. A. & Mishra, B., Jan 1 2019, In : Communications of the ACM. 62, 1, p. 85-93 9 p.

Research output: Contribution to journalReview article

Deep geometric prior for surface reconstruction

Williams, F., Schneider, T., Silva, C., Zorin, D., Bruna, J. & Panozzo, D., Jun 2019, Proceedings - 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2019. IEEE Computer Society, p. 10122-10131 10 p. 8954349. (Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition; vol. 2019-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deferred runtime pipelining for contentious multicore software transactions

Mu, S., Angel, S. & Shasha, D., Mar 25 2019, Proceedings of the 14th EuroSys Conference 2019. Association for Computing Machinery, Inc, 3303966. (Proceedings of the 14th EuroSys Conference 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deformation capture via soft and stretchable sensor arrays

Glauser, O., Panozzo, D., Hilliges, O. & Sorkine-Hornung, O., Apr 1 2019, In : ACM Transactions on Graphics. 38, 2, 16.

Research output: Contribution to journalArticle

Open Access

DesIGN: Design inspiration from generative networks

Sbai, O., Elhoseiny, M., Bordes, A., LeCun, Y. & Couprie, C., Jan 1 2019, Computer Vision – ECCV 2018 Workshops, Proceedings. Leal-Taixé, L. & Roth, S. (eds.). Springer-Verlag, p. 37-44 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11131 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Detecting spatial clusters of disease infection risk using sparsely sampled social media mobility patterns

Souza, R. C. S. N. P., Assunção, R. M., Neill, D. B. & Meira, W., Nov 5 2019, 27th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, ACM SIGSPATIAL GIS 2019. Banaei-Kashani, F., Trajcevski, G., Guting, R. H., Kulik, L. & Newsam, S. (eds.). Association for Computing Machinery, p. 359-368 10 p. (GIS: Proceedings of the ACM International Symposium on Advances in Geographic Information Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Dialogwae: Multimodal response generation with conditional Wasserstein auto-encoder

Gu, X., Cho, K., Ha, J. W. & Kim, S., Jan 1 2019.

Research output: Contribution to conferencePaper

Diffusion scattering transforms on graphs

Gama, F., Bruna Estrach, J. & Ribeiro, A., Jan 1 2019.

Research output: Contribution to conferencePaper

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

Fehlner-Peach, H., Magnabosco, C., Raghavan, V., Scher, J. U., Tett, A., Cox, L. M., Gottsegen, C., Watters, A., Wiltshire-Gordon, J. D., Segata, N., Bonneau, R. & Littman, D. R., Nov 13 2019, In : Cell Host and Microbe. 26, 5, p. 680-690.e5

Research output: Contribution to journalArticle

Editorial: Network Bioscience

Antoniotti, M., Mishra, B. & Pellegrini, M., Nov 20 2019, In : Frontiers in Genetics. 10, 1160.

Research output: Contribution to journalEditorial

Open Access

Effective subdivision algorithm for isolating zeros of real systems of equations, with complexity analysis

Xu, J. & Yap, C., Jul 8 2019, ISSAC 2019 - Proceedings of the 2019 ACM International Symposium on Symbolic and Algebraic Computation. Association for Computing Machinery, p. 355-362 8 p. (Proceedings of the International Symposium on Symbolic and Algebraic Computation, ISSAC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elites tweet to get feet off the streets: Measuring regime social media strategies during protest

Munger, K., Bonneau, R., Nagler, J. & Tucker, J., Oct 1 2019, In : Political Science Research and Methods. 7, 4, p. 815-834 20 p.

Research output: Contribution to journalArticle

Open Access

Enabling a permanent revolution in internet architecture

McCauley, J., Harchol, Y., Panda, A., Raghavan, B. & Shenker, S., Aug 19 2019, SIGCOMM 2019 - Proceedings of the 2019 Conference of the ACM Special Interest Group on Data Communication. Association for Computing Machinery, Inc, p. 1-14 14 p. (SIGCOMM 2019 - Proceedings of the 2019 Conference of the ACM Special Interest Group on Data Communication).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Energy-based generative adversarial networks

Zhao, J., Mathieu, M. & LeCun, Y., Jan 1 2019.

Research output: Contribution to conferencePaper