Research Output 1960 2019

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Conference contribution
2019

Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknots

Petingi, L. & Schlick, T., Jan 1 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer-Verlag, p. 68-79 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dual Graph
RNA
Partitioning
Fragment
Graph in graph theory
2018

Nondestructive and Fast MRI-based Technique Battery Diagnostic

Jerschow, A., Jan 1 2018, 35th Annual International Battery Seminar and Exhibit 2018. Cambridge EnerTech, Cambridge Innovation Institute, Vol. 1. p. 136-158 23 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance imaging
2016

Coherent wavepacket evolution analysis reveals a conical intersection in a highly fluorescent molecule

Brazard, J., Bizimana, L. A., Carbery, W. P., Gellen, T. & Turner, D., Jul 18 2016, International Conference on Ultrafast Phenomena, UP 2016. OSA - The Optical Society

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phase shift
Absorption spectra
Laser pulses
Molecules

Upgrade of the HET segment control system, utilizing state-of-The-Art, decentralized and embedded system controllers

Haeuser, M., Richter, J., Kriel, H., Turbyfill, A., Buetow, B. & Ward, M., Jan 1 2016, Ground-Based and Airborne Telescopes VI. Marshall, H. K., Hall, H. J. & Gilmozzi, R. (eds.). SPIE, Vol. 9906. 990602

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hobby-Eberly Telescope
Embedded systems
Telescopes
Embedded Systems
Decentralized
2014

Imaging with photoelastic modulators

Nichols, S., Freudenthal, J., Arteaga, O. & Kahr, B., 2014, Polarization: Measurement, Analysis, and Remote Sensing XI. SPIE, Vol. 9099. 909912

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modulator
Modulators
modulators
Imaging
Imaging techniques

Polarimetric analysis of the extraordinary optical transmission through subwavelength hole arrays

Nichols, S., Arteaga, O., Maoz, B., Markovich, G. & Kahr, B., 2014, Plasmonics: Metallic Nanostructures and Their Optical Properties XII. SPIE, Vol. 9163. 91631W

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oblique
Light transmission
Incidence
incidence
Square Lattice
2013

Asynchronous signal passing for tile self-assembly: Fuel efficient computation and efficient assembly of shapes

Padilla, J. E., Patitz, M. J., Pena, R., Schweller, R. T., Seeman, N., Sheline, R., Summers, S. M. & Zhong, X., 2013, Unconventional Computation and Natural Computation - 12th International Conference, UCNC 2013, Proceedings. Vol. 7956 LNCS. p. 174-185 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7956 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Self-assembly
Tile
Self assembly
Glues
Model

Electronic and vibrational coherences in algal light-harvesting proteins

Turner, D. & Scholes, G. D., 2013, 18th International Conference on Ultrafast Phenomena, UP 2012. Vol. 41. 08004

Research output: Chapter in Book/Report/Conference proceedingConference contribution

proteins
algae
electronics
electronic spectra
vibration mode
2011

Comparison of electronic and vibrational coherence measured by two-dimensional electronic spectroscopy

Turner, D. & Scholes, G. D., 2011, Laser Science, LS 2011.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dye lasers
dye lasers
electronic spectra
Semiconductor quantum dots
quantum dots

Finite state automata by DNA self-assembly

Jonoska, N. & Seeman, N., 2011, ICT Innovations 2010 - Second International Conference, ICT Innovations 2010, Revised Selected Papers. Vol. 83 CCIS. p. 1-4 4 p. (Communications in Computer and Information Science; vol. 83 CCIS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Finite automata
Self assembly
DNA
Tile
Transducers

Manipulating crystal growth and polymorphism by confinement in nanoscale crystallization chambers

Hamilton, B., McFerrin, A., Ha, J. M., Hillmyer, M. A. & Ward, M., Jan 1 2011, Materials Engineering and Sciences Division - Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, Vol. 2. p. 891-892 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crystallization
Polymorphism
chamber
Crystal growth
2010

Coherent measurements of high-order electronic correlations in GaAs quantum wells

Turner, D. & Nelson, K. A., 2010, International Conference on Ultrafast Phenomena, UP 2010.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Excitons
Semiconductor quantum wells
excitons
quantum wells
electronics

DNA: Not merely the secret of life

Seeman, N., 2010, Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010. p. 349-350 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA

Impact of carcinogen-DNA adducts on DNA methylation

Gromova, E. S., Subach, O. M., Baskunov, V. B. & Geacintov, N., Jun 1 2010, Structural Biology of DNA Damage and Repair. American Chemical Society, Vol. 1041. p. 103-116 14 p. (ACS Symposium Series; vol. 1041).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Carcinogens
DNA Adducts
DNA
Methylation
Methyltransferases

Multiple-quantum 2D spectroscopy of many-body correlations in GaAs quantum wells

Turner, D., Stone, K. W., Wen, P., Arias, D. H. & Nelson, K. A., 2010, Ultrafast Phenomena in Semiconductors and Nanostructure Materials XIV. Vol. 7600. 76001J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Exciton
Quantum Well
Gallium Arsenide
Ultrashort pulses
Excitons

Probing biexcitons in quantum dots using femtosecond pump/probe and two dimensional electronic spectroscopy

Tyagi, P., Stone, K., Turner, D., Sewall, S., Nelson, K. & Kambhampati, P., 2010, International Conference on Ultrafast Phenomena, UP 2010.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semiconductor quantum dots
quantum dots
Pumps
Spectroscopy
pumps

Proton transfer in perfluorosulfonic acid functionalized carbon nanotubes

Habenicht, B. F., Paddison, S. J. & Tuckerman, M., 2010, Polymer Materials and Membranes for Energy Devices. Vol. 1269. p. 7-12 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Carbon Nanotubes
Proton transfer
Fluorine
fluorine
Protons

Selective excitation of resonances in 2D fourier transform optical spectroscopy with tailored pulse shapes

Wen, P., Arias, D. H., Turner, D. & Nelson, K. A., 2010, International Conference on Ultrafast Phenomena, UP 2010.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semiconductor quantum wells
Fourier transforms
pulses
spectroscopy
excitation
2009

Aggregation-disaggregation transition of DNA coated colloids: Experiments and theory

Dreyfus, R., Leunissen, M. E., Sha, R., Tkachenko, A. V., Seeman, N. C., Pine, D. J. & Chaikin, P. M., 2009, Extended Abstracts for 6th Annual Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2009. p. 196-200 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Colloids
DNA
Agglomeration
Statistical mechanics
Experiments

Chiroptical imaging of crystals by mueller matrix microscopy

Freundenthal, J., Gunn, E. & Kahr, B., 2009, Laser Science, LS 2009. Optical Society of America

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Polycrystalline materials
Microscopic examination
Anisotropy
Crystalline materials
microscopy

Towards self-replicating materials of DNA functionalized colloidal particles

Leunissen, M. E., Dreyfus, R., Sha, R., Wang, T., Seeman, N. C., Pine, D. J. & Chaikin, P. M., 2009, Extended Abstracts for 6th Annual Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2009. p. 172-176 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA
Seed
Agglomeration
Kinetics
Hot Temperature
2008

All optical platform for parallel and spatiotemporal control of neuronal activity

Wang, S., Wang, Y., Szobota, S., Volgraf, M., Liu, Z., Sun, C., Trauner, D., Isacoff, E. Y. & Zhang, X., 2008, Frontiers in Optics, FiO 2008. Optical Society of America

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Light modulators
light modulators
stimuli
calcium
Calcium

Development of dendritic scaffolds with selective surface sites for biological applications

Goyal, P., Yoon, K. & Weck, M., 2008, American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 1 ed. Vol. 49. p. 29 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Scaffolds

Functional poly(lactide) synthesis for use in biomedical applications

Noga, D. E., Petrie, T. A., Weck, M., García, A. & Collard, D. M., 2008, American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 1 ed. Vol. 49. p. 844 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

poly(lactide)

Mechanistic investigations of crystallization: From self-assembled nanomaterials to pathological biomineralization

Rimer, J. D., Ward, M., Lobo, R. F. & Vlachos, D., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomineralization
Crystallization
Nanostructured materials

Pathological biomineralization of calcium oxalate kidney stones

Rimer, J. D., Wesson, J. A. & Ward, M., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomineralization
Calcium Oxalate
Calcium

Proton - SO3 -Interactions in nafion polymer electrolyte membrane fuel cells gleaned from Ab initio molecular dynamics simulations of Mono-, Di-, and Tetra-Hydrate trifluoromethanesulfonic acids

Hayes, R. L. & Tuckerman, M., 2008, 2008 AIChE Spring National Meeting, Conference Proceedings.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proton exchange membrane fuel cells (PEMFC)
Molecular Dynamics Simulation
Hydrates
Electrolytes
Molecular dynamics

Proton - SO3 - interactions in Nafion polymer electrolyte membrane fuel cells gleaned from ab initio molecular dynamics simulations of mono-, di-, and tetra-hydrate trifluoromethanesulfonic acids

Hayes, R. L. & Tuckerman, M., 2008, American Chemical Society - 235th National Meeting, Abstracts of Scientific Papers.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proton exchange membrane fuel cells (PEMFC)
Hydrates
Molecular dynamics
Protons
Acids

Tunable polymer networks based on specific hydrogen bonding motifs

Nair, K. P., Weck, M. & Breedveld, V., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hydrogen bonds
Polymers
2007

Solid-state NMR studies of ultramarine pigments discloration

Del Federico, E., Newman, J., Tyne, L., O'Hern, C., Isolani, L. & Jerschow, A., 2007, Magnetic Resonance in Material Science. Vol. 984. p. 45-50 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chromophores
Pigments
Plastic coatings
Nuclear magnetic resonance
Color
2006

DNA-based self-assembly methods for nanoscale integrated circuits

Le, J. D., Pinto, Y. Y., Musier-Forsyth, K., Seeman, N., Taton, T. A. & Kiehl, R. A., 2006, 3rd Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2006. p. 142-147 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Self assembly
Nanowires
Integrated circuits
DNA
Nanoelectronics

Self-correcting self-assembly: Growth models and the hammersley process

Baryshnikov, Y., Coffman, E., Seeman, N. & Yimwadsana, T., 2006, DNA Computing - 11th International Workshop on DNA Computing, DNA11, Revised Selected Papers. Vol. 3892 LNCS. p. 1-11 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3892 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Self-assembly
Growth Model
Molecular Computers
Self assembly
Growth
2005

Biomolecular implementation of computing devices with unbounded memory

Cavaliere, M., Jonoska, N., Yogev, S., Piran, R., Keinan, E. & Seeman, N., 2005, Lecture Notes in Computer Science. Ferretti, C., Mauri, G. & Zandron, C. (eds.). Vol. 3384. p. 35-49 15 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Molecules
Enzymes
DNA

Detailed analyses of transport limitations during Afm measurements of solution crystal growth

Gasperino, D., Yeckel, A., Ward, M. & Derby, J. J., 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Conference Proceedings. p. 1603 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crystal growth
Crystals
Mass transfer
Kinetics
Supersaturation

DNA assembly of component arrays for nanoscale electronics

Kiehl, R. A., Le, J. D., Musier-Forsyth, K., Pinto, Y. Y., Seeman, N. & Andrew Taton, T., 2005, 2005 5th IEEE Conference on Nanotechnology. Vol. 2. p. 5-8 4 p. 1500636

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA
Electronic equipment
Nanoelectronics
Self assembly
Nanowires

Experiments in structural DNA nanotechnology: Arrays and devices

Seeman, N., Ding, B., Liao, S., Wang, T., Sherman, W. B., Constantinou, P. E., Kopatsch, J., Maa, C., Sha, R., Liu, F., Yan, H. & Lukeman, P. S., 2005, Proceedings of SPIE - The International Society for Optical Engineering. Lai, WY-C., Pau, S. & Lopez, O. D. (eds.). Vol. 5592. p. 71-81 11 p. 08

Research output: Chapter in Book/Report/Conference proceedingConference contribution

nanotechnology
Nanotechnology
DNA
deoxyribonucleic acid
Computer aided language translation

Motifs and methods in structural DNA nanotechnology

Sha, R., Zhang, X., Liao, S., Constantinou, P. E., Ding, B., Wang, T., Seeman, N. & al., 2005, Proceedings of the International Conference on Nanomaterials, NANO 2005, Mepco Schlenk Engineering College, Srivakasi, India, July 13-15, 2005. Rajendran, V. (ed.). p. 3-10

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Polymer-immobilized Co-Salen catalysts for the hydrolytic kinetic resolution of racemic epoxides

Zheng, X., Holbach, M., Weck, M. & Jones, C. W., 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Conference Proceedings. p. 9568 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Catalysts
Kinetics
Polymers

Solid-state NMR and resonance Raman studies of ultramarine pigments

Del Federico, E., Schoefberger, W., Kumar, R., Ling, W., Kapetanaki, S. M., Schelvis, J. & Jerschow, A., 2005, Materials Research Society Symposium Proceedings. Vandiver, P., Mass, J. & Murray, A. (eds.). Vol. 852. p. 247-254 8 p. OO5.4

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pigments
Nuclear magnetic resonance
Colorimetry
Chromophores
Nuclear magnetic resonance spectroscopy

Structural DNA nanotechnology: Molecular construction and computation

Sha, R., Zhang, X., Liao, S., Constantinou, P. E., Ding, B., Wang, T., Garibotti, A. V., Zhong, H., Israel, L. B., Wang, X., Wu, G., Chakraborty, B., Chen, J., Zhang, Y., Yan, H., Shen, Z., Shen, W., Sa-Ardyen, P., Kopatsch, J., Zheng, J. & 5 others, Lukeman, P. S., Sherman, W. B., Mao, C., Jonoska, N. & Seeman, N., 2005, Lecture Notes in Computer Science. Calude, C. S., Dinneen, M. J., Paun, G., Perez-Jimenez, M. J. & Rozenberg, G. (eds.). Vol. 3699. p. 20-31 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nanotechnology
DNA
Molecules
Nanoelectronics
Crystallography

The design of self-assembled 3D DNA networks

Mao, C., Constantinou, P. E., Liu, F., Kopatsch, J., Wang, T., Ding, B., Sha, R., Sherman, W. B., Yan, H., Birktoft, J. J., Zhong, H., Lukeman, P. S., Pinto, Y., Foley, L., Wenzler, L. A., Sweet, R., Becker, M. & Seeman, N., 2005, Nanoscale Devices, Materials, and Biological Systems: Fundamental and Applications - Proceedings of the International Symposium. Cahay, M., Urquidi-Macdonald, M., Bandyopadhyay, S., Guo, P., Hasegawa, H., Koshida, N., Leburton, J. P., Lockwood, D. J., Seal, S. & Stella, A. (eds.). Vol. PV 2004-13. p. 509-519 11 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA
Nanotechnology
Nanorobotics
Hydrogen bonds
Diffraction
2004

Application of microgels for optical tagging

Cathcart, J. M., Lyon, L. A., Weck, M. & Bock, R. D., 2004, Proceedings of SPIE - The International Society for Optical Engineering. Carapezza, E. M. (ed.). PART 2 ed. Vol. 5403. p. 774-781 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

marking
nanoparticles
Infrared radiation
microparticles
Bragg reflectors

Effect of the complex inorganic impurity K4[Ru 2Cl10O] on dielectric properties and phase transition of KDP crystal

Grabovsky, S. V., Shnaidshtein, I. V., Strukov, B. A., Jang, S. H. & Kahr, B., Jan 1 2004, Ferroelectrics. Vol. 298. p. 103-106 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dielectric properties
dielectric properties
sectors
Phase transitions
Impurities

Searching for 2D RNA geometries in bacterial genomes

Laserson, U., Gan, H. H. & Schlick, T., 2004, Proceedings of the Twentieth Annual Symposium on Computational Geometry (SCG'04). p. 373-377 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

RNA
Genome
Genes
Geometry
Energy Landscape
2003

Design of photonic crystals fabricated from DNA lattices

Sauer, P., Cui, H. L. & Seeman, N. C., 2003, 2003 International Semiconductor Device Research Symposium, ISDRS 2003 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 44-45 2 p. 1271987

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photonic crystals
Crystal lattices
DNA
Lattice constants
Self assembly

Design tools for the fabrication of a photonic crystal based on DNA junctions

Sauer, P., Cui, H. L. & Seeman, N., 2003, 2003 3rd IEEE Conference on Nanotechnology, IEEE-NANO 2003 - Proceedings. IEEE Computer Society, Vol. 1. p. 428-431 4 p. 1231810

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photonic crystals
DNA
deoxyribonucleic acid
photonics
Fabrication
2002

Methods for macromolecular modeling (M3): Assessment of progress and future perspectives

Gan, H. H. & Schlick, T., 2002, Computational Methods for Macromolecules: Challenges and Applications: Proceedings of the 3rd International Workshop on Algorithms for Macromolecular Modelling, New York, October 12-14, 2000. Schlick, T. & Gan, H. H. (eds.). Berlin: Springer-Verlag, p. 1-25 (Lecture Notes in Computational Science and Engineering; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Side chain polymers with hydrogen bonding recognition sites by ROMP of triazine function alized norbornenes

Stubbs, L. P., Adams, J. & Weck, M., 2002, American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 1 ed. Polymer Preprints ACS, Vol. 43. p. 545-546 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Synthesis of ALQ3-containing polymers using ring-opening metathesis polymerization

Meyers, A. & Weck, M., 2002, American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 2 ed. Polymer Preprints ACS, Vol. 43. p. 1134 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ring opening polymerization
Polymers
2001

Challenges and applications for self-assembled DNA nanostructures

Reif, J. H., LaBean, T. H. & Seeman, N., 2001, DNA Computing - 6th International Workshop on DNA-Based Computers, DNA 2000 Leiden, The Netherlands, June 13-17, 2000 Revised Papers. Springer Verlag, Vol. 2054. p. 173-198 26 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2054).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Self-assembly
Nanostructures
Tile
DNA
Tiling