Research Output per year
Research Output
2019
Author Correction: Testing the key assumption of heritability estimates based on genome-wide genetic relatedness (Journal of Human Genetics, (2014), 59, 6, (342-345), 10.1038/jhg.2014.14)
Conley, D., Siegal, M. L., Domingue, B. W., Harris, K. M., McQueen, M. B. & Boardman, J. D., Jun 1 2019, In : Journal of Human Genetics. 64, 6, p. 597-598 2 p.Research output: Contribution to journal › Comment/debate
Open Access
Author Correction: c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont (Nature, (2018), 554, 7692, (373-377), 10.1038/nature25500)
Xu, M., Pokrovskii, M., Ding, Y., Yi, R., Au, C., Harrison, O. J., Galan, C., Belkaid, Y., Bonneau, R. & Littman, D. R., Feb 21 2019, In : Nature. 566, 7744, p. E7Research output: Contribution to journal › Comment/debate
Author Correction: The bone marrow microenvironment at single-cell resolution (Nature, (2019), 569, 7755, (222-228), 10.1038/s41586-019-1104-8)
Tikhonova, A. N., Dolgalev, I., Hu, H., Sivaraj, K. K., Hoxha, E., Cuesta-Domínguez, Á., Pinho, S., Akhmetzyanova, I., Gao, J., Witkowski, M., Guillamot, M., Gutkin, M. C., Zhang, Y., Marier, C., Diefenbach, C., Kousteni, S., Heguy, A., Zhong, H., Fooksman, D. R., Butler, J. M. & 6 others, , Aug 1 2019, In : Nature. 572, 7767, p. E6Research output: Contribution to journal › Comment/debate
Correction: Transmission bottleneck size estimation from pathogen deep-sequencing data, with an application to human influenza A virus (Journal of Virology (2017) 91:14 (e00171-17) DOI: 10.1128/JVI.00171-17)
Leonard, A. S., Weissman, D. B., Greenbaum, B., Ghedin, E. & Koelle, K., Sep 1 2019, In : Journal of virology. 93, 17, e00936-19.Research output: Contribution to journal › Comment/debate
Open Access
Erratum: Correction for Sobel Leonard et al., "Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus" (Journal of virology (2017) 91 14 PII: e00936-19)
Sobel Leonard, A., Weissman, D. B., Greenbaum, B., Ghedin, E. & Koelle, K., Sep 1 2019, In : Journal of virology. 93, 17Research output: Contribution to journal › Comment/debate
Open Access
Isolation of biologically active compounds from mangrove sediments
Solntsev, K. M., Schramm, S., Kremb, S., Gunsalus, K. C. & Amin, S. A., Oct 1 2019, In : Analytical and Bioanalytical Chemistry. 411, 25, p. 6521-6529 9 p.Research output: Contribution to journal › Comment/debate
Open Access
2018
Corrigendum: 5-Formylcytosine mediated DNA - Protein cross-links block DNA replication and induce mutations in human cells (Nucleic Acids Research (2018) 46:13 (6455-6469) DOI: 10.1093/nar/gky444)
Ji, S., Fu, I., Naldiga, S., Shao, H., Basu, A. K., Broyde, S. & Tretyakova, N. Y., Jan 1 2018, In : Nucleic acids research. 46, 18, 1 p.Research output: Contribution to journal › Comment/debate
Corrigendum: Landscape of X chromosome inactivation across human tissues
Tukiainen, T., Villani, A. C., Yen, A., Rivas, M. A., Marshall, J. L., Satija, R., Aguirre, M., Gauthier, L., Fleharty, M., Kirby, A., Cummings, B. B., Castel, S. E., Karczewski, K. J., Aguet, F., Byrnes, A., Consortium, GTE., Lappalainen, T., Regev, A., Ardlie, K. G., Hacohen, N. & 1 others, , Mar 7 2018, In : Nature. 555, 7695, 1 p.Research output: Contribution to journal › Comment/debate
Open Access
Erratum: Correction: A sibling method for identifying vQTLs (PloS one (2018) 13 4 (e0194541))
Conley, D., Johnson, R., Domingue, B., Dawes, C., Boardman, J. & Siegal, M. L., Jan 1 2018, In : PloS one. 13, 5, p. e0196881Research output: Contribution to journal › Comment/debate
Open Access
Erratum to: Evolution of human malaria (Nature Microbiology, (2018), 3, 6, (642-643), 10.1038/s41564-018-0170-2)
Carlton, J. M., Oct 1 2018, In : Nature Microbiology. 3, 10, 1 p.Research output: Contribution to journal › Comment/debate
Erratum to: DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions (Nature, (2015), 528, 7583, (517-522), 10.1038/nature16193)
Huang, W., Thomas, B., Flynn, R. A., Gavzy, S. J., Wu, L., Kim, S. V., Hall, J. A., Miraldi, E. R., Ng, C. P., Rigo, F., Meadows, S., Montoya, N. R., Herrera, N. G., Domingos, A. I., Rastinejad, F., Myers, R. M., Fuller-Pace, F. V., Bonneau, R., Chang, H. Y., Acuto, O. & 1 others, , Oct 4 2018, In : Nature. 562, 7725, 1 p.Research output: Contribution to journal › Comment/debate
Erratum to “Retinal perception and ecological significance of color vision in insects” [Curr. Opin. Insect Sci. 24 (2017) 75–83] (S2214574517300111) (10.1016/j.cois.2017.09.007))
Lebhardt, F. & Desplan, C., Jun 2018, In : Current Opinion in Insect Science. 27, p. 116-117 2 p.Research output: Contribution to journal › Comment/debate
Translating microbiome futures
Taroncher-Oldenburg, G., Jones, S., Blaser, M., Bonneau, R., Christey, P., Clemente, J. C., Elinav, E., Ghedin, E., Huttenhower, C., Kelly, D., Kyle, D., Littman, D., Maiti, A., Maue, A., Olle, B., Segal, L., van Hylckama Vlieg, J. E. T. & Wang, J., Nov 9 2018, In : Nature Biotechnology. 36, 11, p. 1037-1042 6 p.Research output: Contribution to journal › Comment/debate
2017
Corrigendum to: CTCF-mediated topological boundaries during development foster appropriate gene regulation (Genes & Development, (2016), 30, (2657–2662), 10.1101/gad.288324.116)
Narendra, V., Bulajić, M., Dekker, J., Mazzoni, E. O. & Reinberg, D., Aug 15 2017, In : Genes and Development. 31, 16, p. 2657-2662 6 p.Research output: Contribution to journal › Comment/debate
Molecular genetics: Chaperone protein gets personal
Siegal, M. L., May 4 2017, In : Nature. 545, 7652, p. 36-37 2 p.Research output: Contribution to journal › Comment/debate
2016
Condensin and Hmo1 Mediate a Starvation-Induced Transcriptional Position Effect within the Ribosomal DNA Array (Cell Reports (2016) 14(5) (p1010–p1017)(S2211124716000097)(10.1016/j.celrep.2016.01.005))
Wang, D., Mansisidor, A., Prabhakar, G. & Hochwagen, A., Oct 4 2016, In : Cell Reports. 17, 2, 1 p.Research output: Contribution to journal › Comment/debate
Corrigendum: DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions
Huang, W., Thomas, B., Flynn, R. A., Gavzy, S. J., Wu, L., Kim, S. V., Hall, J. A., Miraldi, E. R., Ng, C. P., Rigo, F., Meadows, S., Montoya, N. R., Herrera, N. G., Domingos, A. I., Rastinejad, F., Myers, R. M., Fuller-Pace, F. V., Bonneau, R., Chang, H. Y., Acuto, O. & 1 others, , May 5 2016, In : Nature. 533, 7601, 1 p.Research output: Contribution to journal › Comment/debate
Erratum: Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape (Cell (2016) 165(5) (1280–1292))
O'Malley, R. C., Huang, S. S. C., Song, L., Lewsey, M. G., Bartlett, A., Nery, J. R., Galli, M., Gallavotti, A. & Ecker, J. R., Sep 8 2016, In : Cell. 166, 6, 1 p.Research output: Contribution to journal › Comment/debate
Erratum: An IL-23R/IL-22 Circuit Regulates Epithelial Serum Amyloid A to Promote Local Effector Th17 Responses (Cell (2015) 163 (381-393))
Sano, T., Huang, W., Hall, J. A., Yang, Y., Chen, A., Gavzy, S. J., Lee, J. Y., Ziel, J. W., Miraldi, E. R., Domingos, A. I., Bonneau, R. & Littman, D. R., Jan 14 2016, In : Cell. 164, 1-2, 1 p.Research output: Contribution to journal › Comment/debate
Erratum to: MINE: Module Identification in Networks[BMC Bioinformatics. (2011);12:192.]
Rhrissorrakrai, K. & Gunsalus, K. C., Feb 17 2016, In : BMC bioinformatics. 17, 1, 89.Research output: Contribution to journal › Comment/debate
Evolution of plant phenotypes, from genomes to traits
Casacuberta, J. M., Jackson, S., Panaud, O., Purugganan, M. & Wendel, J., Jan 1 2016, In : G3: Genes, Genomes, Genetics. 6, 4, p. 775-778 4 p.Research output: Contribution to journal › Comment/debate
Systems genetics of plant adaptation to environmental stresses
Groen, S. C. & Purugganan, M. D., Jan 1 2016, In : Applications in Plant Sciences. 103, 12, p. 2019-2021 3 p.Research output: Contribution to journal › Comment/debate
2015
Breaking TADs: Insights into hierarchical genome organization
Rocha, P. P., Raviram, R., Bonneau, R. & Skok, J. A., Jun 1 2015, In : Epigenomics. 7, 4, p. 523-526 4 p.Research output: Contribution to journal › Comment/debate
Correction: Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture (Proceedings of the National Academy of Sciences of the United States of America (2015) 110 (15133-15138) DOI: 0.1073/pnas.1305883110)
Rosas, U., Cibrian-Jaramillo, A., Ristova, D., Banta, J. A., Gifford, M. L., Fan, A. H., Zhou, R. W., Kim, G. J., Krouk, G., Birnbaum, K. D., Purugganan, M. D. & Coruzzi, G. M., May 12 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 19, p. E2555Research output: Contribution to journal › Comment/debate
Erratum: Resistance to Nucleotide Excision Repair of Bulky Guanine Adducts Opposite Abasic Sites in DNA Duplexes and Relationships between Structure and Function (PLoS ONE (2015) 10:9 (e0137124) DOI:10.1371/journal.pone.0137124)
Liu, Z., Ding, S., Kropachev, K., Jia, L., Amin, S., Broyde, S. & Geacintov, N. E., Oct 29 2015, In : PloS one. 10, 10, e0142068.Research output: Contribution to journal › Comment/debate
Erratum: Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics (Cell Systems (2015) 1 (72-87) )
Afshinnekoo, E., Meydan, C., Chowdhury, S., Jaroudi, D., Boyer, C., Bernstein, N., Maritz, J. M., Reeves, D., Gandara, J., Chhangawala, S., Ahsanuddin, S., Simmons, A., Nessel, T., Sundaresh, B., Pereira, E., Jorgensen, E., Kolokotronis, S. O., Kirchberger, N., Garcia, I., Gandara, D. & 26 others, , Jul 29 2015, In : Cell Systems. 1, 1, p. 97-97.e3 13.Research output: Contribution to journal › Comment/debate
Erratum: Pathogen cell-to-cell variability drives heterogeneity in host immune responses ((Cell (2015) 162 (1309-1321))
Avraham, R., Haseley, N., Brown, D., Penaranda, C., Jijon, H. B., Trombetta, J. J., Satija, R., Shalek, A. K., Xavier, R. J., Regev, A. & Hung, D. T., Oct 8 2015, In : Cell. 163, 2, 1 p.Research output: Contribution to journal › Comment/debate
Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells (Nature (2014) 516 (5661) DOI:10.1038/nature13920)
Kumar, R. M., Cahan, P., Shalek, A. K., Satija, R., DaleyKeyser, A. J., Li, H., Zhang, J., Pardee, K., Gennert, D., Trombetta, J. J., Ferrante, T. C., Regev, A., Daley, G. Q. & Collins, J. J., Mar 5 2015, In : Nature. 519, 7541, 1 p.Research output: Contribution to journal › Comment/debate
The Expendables: Natural selection driving reduced gene function (Comment on DOI 10.1002/bies.201500083)
Bernstein, M. R. & Rockman, M. V., Nov 2015, In : BioEssays. 37, 11, 1 p.Research output: Contribution to journal › Comment/debate
2014
Corrigendum to 3D arrays for high throughput assay of cell migration and electrotaxis [Cell Biol Int 37, 995-1002]
Zhao, S., Gao, R., Devreotes, P. N., Mogilner, A. & Zhao, M., Aug 2014, In : Cell Biology International. 38, 8, 1 p.Research output: Contribution to journal › Comment/debate
Erratum: Comparative analysis of RNA sequencing methods for degraded or low-input samples (Nature Methods (2013) 10 (623-629 )
Adiconis, X., Borges-Rivera, D., Satija, R., DeLuca, D. S., Busby, M. A., Berlin, A. M., Sivachenko, A., Thompson, D. A., Wysoker, A., Fennell, T., Gnirke, A., Pochet, N., Regev, A. & Levin, J. Z., Jan 1 2014, In : Nature Protocols. 9, 4, 1 p.Research output: Contribution to journal › Comment/debate
Erratum: Comparative analysis of RNA sequencing methods for degraded or low-input samples (Nature Methods (2013) 10 (623-629))
Adiconis, X., Borges-Rivera, D., Satija, R., Deluca, D. S., Busby, M. A., Berlin, A. M., Sivachenko, A., Thompson, D. A., Wysoker, A., Fennell, T., Gnirke, A., Pochet, N., Regev, A. & Levin, J. Z., Feb 1 2014, In : Nature methods. 11, 2, 1 p.Research output: Contribution to journal › Comment/debate
Interpreting 4C-Seq data: How far can we go?
Raviram, R., Rocha, P. P., Bonneau, R. & Skok, J. A., Oct 1 2014, In : Epigenomics. 6, 5, p. 455-457 3 p.Research output: Contribution to journal › Comment/debate
The genetics of sex: Exploring differences
Arbeitman, M. N., Kopp, A., Siegal, M. L. & Van Doren, M., Jun 2014, In : Genetics. 197, 2, p. 527-529 3 p.Research output: Contribution to journal › Comment/debate
2012
Altruistic cell death and collective drug resistance
Carmona-Fontaine, C. & Xavier, J. B., Dec 14 2012, In : Molecular systems biology. 8, 627.Research output: Contribution to journal › Comment/debate
Balance of Activity between LN vs and Glutamatergic Dorsal Clock Neurons Promotes Robust Circadian Rhythms in Drosophila
Collins, B., Kane, E. A., Reeves, D. C., Akabas, M. H. & Blau, J., Jun 21 2012, In : Neuron. 74, 6, 1 p.Research output: Contribution to journal › Comment/debate
Did the great dying of life take 700 k.y.? Evidence from global astronomical correlation of the Permian-Triassic boundary interval
Rampino, M. R. & Kaiho, K., May 2012, In : Geology. 40, 5, p. e267Research output: Contribution to journal › Comment/debate
Erratum: A protein domain-based interactome network for C. elegans early embryogenesis (Cell (2008) 134 (534-545))
Boxem, M., Maliga, Z., Klitgord, N., Li, N., Lemmens, I., Mana, M., De Lichtervelde, L., Mul, J. D., Van De Peut, D., Devos, M., Simonis, N., Yildirim, M. A., Cokol, M., Kao, H. L., De Smet, A. S., Wang, H., Schlaitz, A. L., Hao, T., Milstein, S., Fan, C. & 17 others, , Dec 21 2012, In : Cell. 151, 7, 1 p.Research output: Contribution to journal › Comment/debate
Erratum to: Cultivation as slow evolutionary entanglement: Comparative data on rate and sequence of domestication(Veget Hist Archaeobot, 10.1007/s00334-011-0329-8)
Fuller, D. Q., Asouti, E. & Purugganan, M. D., Mar 1 2012, In : Vegetation History and Archaeobotany. 21, 2, 1 p.Research output: Contribution to journal › Comment/debate
Hsp90 depletion goes wild
Siegal, M. L. & Masel, J., Feb 27 2012, In : BMC Biology. 10, 14.Research output: Contribution to journal › Comment/debate
The QTN program and the alleles that matter for evolution: All that's gold does not glitter
Rockman, M. V., Jan 1 2012, In : Evolution. 66, 1, p. 1-17 17 p.Research output: Contribution to journal › Comment/debate
2011
Comment on "atmospheric PCO2perturbations associated with the central atlantic magmatic province"
Rampino, M. R. & Caldeira, K., Nov 4 2011, In : Science. 334, 6056, p. 594-bResearch output: Contribution to journal › Comment/debate
Erratum: Centromere clustering: Where synapsis begins ((Current Biology (2011) 21 (R920-R922))
Subramanian, V. V. & Hochwagen, A., Dec 20 2011, In : Current Biology. 21, 24, 1 p.Research output: Contribution to journal › Comment/debate
2010
David fitch
Fitch, D., Oct 26 2010, In : Current Biology. 20, 20, p. R869-R871Research output: Contribution to journal › Comment/debate
Mass extinctions of life and catastrophic flood basalt volcanism
Rampino, M. R., Apr 13 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 15, p. 6555-6556 2 p.Research output: Contribution to journal › Comment/debate
Serotonergic mechanisms in human allergic contact dermatitis (Acta Dermato-Venereologica (2007) 87, (390-396))
El-Nour, H., Lundeberg, L., Abdelmagid, N., Lonne-Rahm, S. B., Azmitia, E. C. & Nordlind, K., Oct 12 2010, In : Acta Dermato-Venereologica. 90, 5, 1 p.Research output: Contribution to journal › Comment/debate
The red-ox status of a penicillin-binding protein is an on/off switch for spore peptidoglycan synthesis in Bacillus subtilis: MicroCommentary
Eichenberger, P., Jan 1 2010, In : Molecular Microbiology. 75, 1, p. 10-12 3 p.Research output: Contribution to journal › Comment/debate
Towards a quantitative understanding of mitotic spindle assembly and mechanics
Mogilner, A. & Craig, E., Oct 15 2010, In : Journal of Cell Science. 123, 20, p. 3435-3445 11 p.Research output: Contribution to journal › Comment/debate
2009
Draft genome of the filarial nematode parasite Brugia malayi (Science (2007) (1756))
Ghedin, E., Anton, B. P. & White, O., Jan 2 2009, In : Science. 323, 5910, 1 p.Research output: Contribution to journal › Comment/debate
Erratum: The fifth sentence under "Protoplast Isolation and Transfection (Materials and Methods (2009)149: (1231-1239))
Bargmann, B. O. R. & Birnbaum, K. D., Jun 1 2009, In : Plant physiology. 150, 2, 1 p.Research output: Contribution to journal › Comment/debate